Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09290

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09280 and SGL_RS09285 are separated by 9 nucleotidesSGL_RS09285 and SGL_RS09290 are separated by 72 nucleotidesSGL_RS09290 and SGL_RS09295 are separated by 113 nucleotides SGL_RS09280: SGL_RS09280 - DUF3084 domain-containing protein, at 1,587,899 to 1,589,374 _RS09280 SGL_RS09285: SGL_RS09285 - global nitrogen regulator NtcA, at 1,589,384 to 1,590,061 _RS09285 SGL_RS09290: SGL_RS09290 - hypothetical protein, at 1,590,134 to 1,590,382 _RS09290 SGL_RS09295: SGL_RS09295 - alpha/beta hydrolase, at 1,590,496 to 1,592,364 _RS09295 Position (kb) 1590 1591Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1590.117 kb on + strandat 1590.142 kb on + strandat 1590.205 kb on - strand, within SGL_RS09290at 1590.289 kb on - strand, within SGL_RS09290at 1590.456 kb on + strandat 1590.581 kb on - strandat 1590.664 kb on - strandat 1590.900 kb on + strand, within SGL_RS09295at 1590.906 kb on - strand, within SGL_RS09295at 1590.906 kb on - strand, within SGL_RS09295at 1591.044 kb on - strand, within SGL_RS09295at 1591.063 kb on - strand, within SGL_RS09295at 1591.063 kb on - strand, within SGL_RS09295at 1591.119 kb on - strand, within SGL_RS09295at 1591.157 kb on - strand, within SGL_RS09295at 1591.227 kb on + strand, within SGL_RS09295at 1591.227 kb on + strand, within SGL_RS09295

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,590,117 + -1.4
1,590,142 + +1.0
1,590,205 - SGL_RS09290 0.29 +2.2
1,590,289 - SGL_RS09290 0.62 +1.9
1,590,456 + -1.2
1,590,581 - -2.5
1,590,664 - -5.6
1,590,900 + SGL_RS09295 0.22 -5.1
1,590,906 - SGL_RS09295 0.22 -6.7
1,590,906 - SGL_RS09295 0.22 -5.5
1,591,044 - SGL_RS09295 0.29 -5.7
1,591,063 - SGL_RS09295 0.30 -2.9
1,591,063 - SGL_RS09295 0.30 -5.7
1,591,119 - SGL_RS09295 0.33 -3.5
1,591,157 - SGL_RS09295 0.35 -5.9
1,591,227 + SGL_RS09295 0.39 -5.6
1,591,227 + SGL_RS09295 0.39 -4.8

Or see this region's nucleotide sequence