Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08575

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08570 and SGL_RS08575 are separated by 398 nucleotidesSGL_RS08575 and SGL_RS08580 are separated by 346 nucleotidesSGL_RS08580 and SGL_RS08585 are separated by 95 nucleotides SGL_RS08570: SGL_RS08570 - FkbM family methyltransferase, at 1,428,196 to 1,428,930 _RS08570 SGL_RS08575: SGL_RS08575 - hypothetical protein, at 1,429,329 to 1,430,072 _RS08575 SGL_RS08580: SGL_RS08580 - allophycocyanin alpha chain, at 1,430,419 to 1,430,904 _RS08580 SGL_RS08585: SGL_RS08585 - allophycocyanin subunit beta, at 1,431,000 to 1,431,485 _RS08585 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -1 0 1 2at 1428.494 kb on + strand, within SGL_RS08570at 1428.568 kb on + strand, within SGL_RS08570at 1428.767 kb on - strand, within SGL_RS08570at 1429.082 kb on - strandat 1429.229 kb on - strandat 1429.229 kb on - strandat 1429.266 kb on - strandat 1429.502 kb on + strand, within SGL_RS08575at 1429.541 kb on - strand, within SGL_RS08575at 1429.841 kb on - strand, within SGL_RS08575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
1,428,494 + SGL_RS08570 0.41 -0.2
1,428,568 + SGL_RS08570 0.51 +0.3
1,428,767 - SGL_RS08570 0.78 +0.1
1,429,082 - +0.4
1,429,229 - +0.1
1,429,229 - +0.5
1,429,266 - -0.2
1,429,502 + SGL_RS08575 0.23 +0.6
1,429,541 - SGL_RS08575 0.28 +0.7
1,429,841 - SGL_RS08575 0.69 +1.8

Or see this region's nucleotide sequence