Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08265

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08260 and SGL_RS08265 overlap by 8 nucleotidesSGL_RS08265 and SGL_RS08270 overlap by 22 nucleotidesSGL_RS08270 and SGL_RS08275 are separated by 46 nucleotides SGL_RS08260: SGL_RS08260 - L-histidine N(alpha)-methyltransferase, at 1,362,259 to 1,363,272 _RS08260 SGL_RS08265: SGL_RS08265 - hypothetical protein, at 1,363,265 to 1,363,858 _RS08265 SGL_RS08270: SGL_RS08270 - orotidine-5'-phosphate decarboxylase, at 1,363,837 to 1,364,532 _RS08270 SGL_RS08275: SGL_RS08275 - tetratricopeptide repeat protein, at 1,364,579 to 1,365,448 _RS08275 Position (kb) 1363 1364Strain fitness (log2 ratio) -1 0 1 2 3at 1362.266 kb on + strandat 1362.316 kb on + strandat 1362.515 kb on - strand, within SGL_RS08260at 1362.658 kb on + strand, within SGL_RS08260at 1363.202 kb on + strandat 1363.227 kb on - strandat 1363.296 kb on + strandat 1363.338 kb on - strand, within SGL_RS08265at 1363.415 kb on + strand, within SGL_RS08265at 1363.418 kb on - strand, within SGL_RS08265at 1363.479 kb on + strand, within SGL_RS08265at 1363.493 kb on - strand, within SGL_RS08265at 1363.680 kb on - strand, within SGL_RS08265at 1363.697 kb on + strand, within SGL_RS08265at 1363.759 kb on - strand, within SGL_RS08265

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
1,362,266 + +0.4
1,362,316 + -0.3
1,362,515 - SGL_RS08260 0.25 +0.3
1,362,658 + SGL_RS08260 0.39 +0.1
1,363,202 + -0.1
1,363,227 - +0.0
1,363,296 + -0.3
1,363,338 - SGL_RS08265 0.12 +0.8
1,363,415 + SGL_RS08265 0.25 +1.6
1,363,418 - SGL_RS08265 0.26 +0.5
1,363,479 + SGL_RS08265 0.36 +3.4
1,363,493 - SGL_RS08265 0.38 +1.5
1,363,680 - SGL_RS08265 0.70 +0.1
1,363,697 + SGL_RS08265 0.73 -1.6
1,363,759 - SGL_RS08265 0.83 +0.6

Or see this region's nucleotide sequence