Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08075

Experiment: Nickel (II) sulfate 5 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS08070 and SGL_RS08075 are separated by 71 nucleotidesSGL_RS08075 and SGL_RS08080 are separated by 310 nucleotidesSGL_RS08080 and SGL_RS08085 are separated by 15 nucleotides SGL_RS08070: SGL_RS08070 - tocopherol cyclase family protein, at 1,323,672 to 1,324,763 _RS08070 SGL_RS08075: SGL_RS08075 - peroxiredoxin, at 1,324,835 to 1,325,404 _RS08075 SGL_RS08080: SGL_RS08080 - Fur family transcriptional regulator, at 1,325,715 to 1,326,134 _RS08080 SGL_RS08085: SGL_RS08085 - DUF1499 domain-containing protein, at 1,326,150 to 1,326,626 _RS08085 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -3 -2 -1 0 1at 1324.021 kb on - strand, within SGL_RS08070at 1324.036 kb on + strand, within SGL_RS08070at 1324.099 kb on - strand, within SGL_RS08070at 1324.131 kb on - strand, within SGL_RS08070at 1324.203 kb on + strand, within SGL_RS08070at 1324.260 kb on - strand, within SGL_RS08070at 1324.312 kb on + strand, within SGL_RS08070at 1324.345 kb on + strand, within SGL_RS08070at 1324.353 kb on - strand, within SGL_RS08070at 1324.394 kb on - strand, within SGL_RS08070at 1324.458 kb on + strand, within SGL_RS08070at 1324.594 kb on + strand, within SGL_RS08070at 1324.661 kb on + strandat 1324.671 kb on - strandat 1324.703 kb on - strandat 1324.762 kb on + strandat 1324.766 kb on + strandat 1324.776 kb on + strandat 1324.789 kb on - strandat 1324.812 kb on - strandat 1324.841 kb on - strandat 1324.903 kb on - strand, within SGL_RS08075at 1324.903 kb on - strand, within SGL_RS08075at 1324.943 kb on + strand, within SGL_RS08075at 1325.025 kb on - strand, within SGL_RS08075at 1325.238 kb on + strand, within SGL_RS08075at 1325.265 kb on + strand, within SGL_RS08075at 1325.619 kb on + strandat 1325.624 kb on + strandat 1325.632 kb on - strandat 1325.632 kb on - strandat 1325.718 kb on + strandat 1325.718 kb on + strandat 1325.790 kb on - strand, within SGL_RS08080at 1325.886 kb on + strand, within SGL_RS08080at 1325.886 kb on + strand, within SGL_RS08080at 1325.894 kb on - strand, within SGL_RS08080at 1325.897 kb on + strand, within SGL_RS08080at 1326.359 kb on + strand, within SGL_RS08085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
remove
1,324,021 - SGL_RS08070 0.32 +0.4
1,324,036 + SGL_RS08070 0.33 +1.2
1,324,099 - SGL_RS08070 0.39 -0.2
1,324,131 - SGL_RS08070 0.42 +0.5
1,324,203 + SGL_RS08070 0.49 -0.1
1,324,260 - SGL_RS08070 0.54 -0.0
1,324,312 + SGL_RS08070 0.59 +0.1
1,324,345 + SGL_RS08070 0.62 +0.9
1,324,353 - SGL_RS08070 0.62 +1.1
1,324,394 - SGL_RS08070 0.66 +0.9
1,324,458 + SGL_RS08070 0.72 +0.2
1,324,594 + SGL_RS08070 0.84 +0.0
1,324,661 + +0.1
1,324,671 - +1.6
1,324,703 - +0.3
1,324,762 + +0.5
1,324,766 + -0.1
1,324,776 + -0.3
1,324,789 - +0.2
1,324,812 - -0.0
1,324,841 - +0.7
1,324,903 - SGL_RS08075 0.12 +1.2
1,324,903 - SGL_RS08075 0.12 +0.7
1,324,943 + SGL_RS08075 0.19 +0.5
1,325,025 - SGL_RS08075 0.33 +0.8
1,325,238 + SGL_RS08075 0.71 +1.3
1,325,265 + SGL_RS08075 0.75 +1.0
1,325,619 + -1.4
1,325,624 + +0.9
1,325,632 - -0.6
1,325,632 - +0.8
1,325,718 + -0.3
1,325,718 + -0.8
1,325,790 - SGL_RS08080 0.18 -2.8
1,325,886 + SGL_RS08080 0.41 -1.6
1,325,886 + SGL_RS08080 0.41 -1.4
1,325,894 - SGL_RS08080 0.43 -0.1
1,325,897 + SGL_RS08080 0.43 -1.5
1,326,359 + SGL_RS08085 0.44 -0.1

Or see this region's nucleotide sequence