Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08025

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08020 and SGL_RS08025 are separated by 161 nucleotidesSGL_RS08025 and SGL_RS08030 are separated by 163 nucleotides SGL_RS08020: SGL_RS08020 - DASH family cryptochrome, at 1,313,278 to 1,314,747 _RS08020 SGL_RS08025: SGL_RS08025 - tetratricopeptide repeat protein, at 1,314,909 to 1,316,063 _RS08025 SGL_RS08030: SGL_RS08030 - glucose-6-phosphate dehydrogenase assembly protein OpcA, at 1,316,227 to 1,317,654 _RS08030 Position (kb) 1314 1315 1316 1317Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 1314.400 kb on + strand, within SGL_RS08020at 1314.632 kb on - strandat 1314.642 kb on - strandat 1314.666 kb on - strandat 1314.681 kb on + strandat 1314.688 kb on - strandat 1314.726 kb on - strandat 1315.258 kb on - strand, within SGL_RS08025at 1315.262 kb on + strand, within SGL_RS08025at 1316.481 kb on + strand, within SGL_RS08030at 1316.481 kb on + strand, within SGL_RS08030at 1316.494 kb on - strand, within SGL_RS08030at 1316.517 kb on + strand, within SGL_RS08030at 1316.583 kb on - strand, within SGL_RS08030at 1316.585 kb on - strand, within SGL_RS08030at 1316.678 kb on - strand, within SGL_RS08030at 1316.746 kb on - strand, within SGL_RS08030at 1316.784 kb on - strand, within SGL_RS08030at 1316.919 kb on - strand, within SGL_RS08030at 1316.970 kb on + strand, within SGL_RS08030

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,314,400 + SGL_RS08020 0.76 +0.1
1,314,632 - -0.3
1,314,642 - +0.1
1,314,666 - +0.1
1,314,681 + +0.7
1,314,688 - -0.3
1,314,726 - +0.1
1,315,258 - SGL_RS08025 0.30 +8.3
1,315,262 + SGL_RS08025 0.31 +7.7
1,316,481 + SGL_RS08030 0.18 +0.9
1,316,481 + SGL_RS08030 0.18 -0.4
1,316,494 - SGL_RS08030 0.19 +0.6
1,316,517 + SGL_RS08030 0.20 +0.6
1,316,583 - SGL_RS08030 0.25 +0.5
1,316,585 - SGL_RS08030 0.25 +0.6
1,316,678 - SGL_RS08030 0.32 +0.6
1,316,746 - SGL_RS08030 0.36 +0.8
1,316,784 - SGL_RS08030 0.39 +0.3
1,316,919 - SGL_RS08030 0.48 -0.0
1,316,970 + SGL_RS08030 0.52 -0.4

Or see this region's nucleotide sequence