Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07965

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07955 and SGL_RS07960 are separated by 3 nucleotidesSGL_RS07960 and SGL_RS07965 overlap by 8 nucleotidesSGL_RS07965 and SGL_RS07970 are separated by 49 nucleotides SGL_RS07955: SGL_RS07955 - hypothetical protein, at 1,299,120 to 1,299,725 _RS07955 SGL_RS07960: SGL_RS07960 - DUF29 domain-containing protein, at 1,299,729 to 1,300,166 _RS07960 SGL_RS07965: SGL_RS07965 - DUF4351 domain-containing protein, at 1,300,159 to 1,300,611 _RS07965 SGL_RS07970: SGL_RS07970 - pentapeptide repeat-containing protein, at 1,300,661 to 1,301,656 _RS07970 Position (kb) 1300 1301Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1299.173 kb on - strandat 1299.318 kb on - strand, within SGL_RS07955at 1299.351 kb on + strand, within SGL_RS07955at 1299.383 kb on + strand, within SGL_RS07955at 1299.909 kb on + strand, within SGL_RS07960at 1300.258 kb on - strand, within SGL_RS07965at 1300.258 kb on - strand, within SGL_RS07965at 1300.378 kb on + strand, within SGL_RS07965at 1300.458 kb on + strand, within SGL_RS07965at 1300.459 kb on - strand, within SGL_RS07965at 1300.471 kb on - strand, within SGL_RS07965at 1300.536 kb on + strand, within SGL_RS07965at 1300.589 kb on - strandat 1300.761 kb on + strand, within SGL_RS07970at 1300.871 kb on + strand, within SGL_RS07970at 1300.872 kb on + strand, within SGL_RS07970at 1300.879 kb on - strand, within SGL_RS07970at 1300.901 kb on + strand, within SGL_RS07970at 1300.901 kb on + strand, within SGL_RS07970at 1300.909 kb on - strand, within SGL_RS07970at 1300.949 kb on - strand, within SGL_RS07970at 1301.014 kb on - strand, within SGL_RS07970at 1301.021 kb on + strand, within SGL_RS07970at 1301.029 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.039 kb on - strand, within SGL_RS07970at 1301.109 kb on + strand, within SGL_RS07970at 1301.121 kb on + strand, within SGL_RS07970at 1301.137 kb on + strand, within SGL_RS07970at 1301.137 kb on - strand, within SGL_RS07970at 1301.182 kb on - strand, within SGL_RS07970at 1301.197 kb on - strand, within SGL_RS07970at 1301.224 kb on + strand, within SGL_RS07970at 1301.424 kb on + strand, within SGL_RS07970at 1301.429 kb on + strand, within SGL_RS07970at 1301.457 kb on - strand, within SGL_RS07970at 1301.462 kb on - strand, within SGL_RS07970at 1301.538 kb on - strand, within SGL_RS07970at 1301.572 kb on - strandat 1301.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,299,173 - +0.2
1,299,318 - SGL_RS07955 0.33 -0.3
1,299,351 + SGL_RS07955 0.38 -0.6
1,299,383 + SGL_RS07955 0.43 +0.3
1,299,909 + SGL_RS07960 0.41 +0.2
1,300,258 - SGL_RS07965 0.22 +0.8
1,300,258 - SGL_RS07965 0.22 +1.2
1,300,378 + SGL_RS07965 0.48 -3.3
1,300,458 + SGL_RS07965 0.66 +0.3
1,300,459 - SGL_RS07965 0.66 +2.2
1,300,471 - SGL_RS07965 0.69 +0.1
1,300,536 + SGL_RS07965 0.83 +2.5
1,300,589 - +0.0
1,300,761 + SGL_RS07970 0.10 +0.4
1,300,871 + SGL_RS07970 0.21 +0.4
1,300,872 + SGL_RS07970 0.21 +0.3
1,300,879 - SGL_RS07970 0.22 -0.2
1,300,901 + SGL_RS07970 0.24 +0.0
1,300,901 + SGL_RS07970 0.24 +0.2
1,300,909 - SGL_RS07970 0.25 -0.0
1,300,949 - SGL_RS07970 0.29 -0.3
1,301,014 - SGL_RS07970 0.35 +0.1
1,301,021 + SGL_RS07970 0.36 +1.0
1,301,029 - SGL_RS07970 0.37 +0.0
1,301,039 - SGL_RS07970 0.38 +0.2
1,301,039 - SGL_RS07970 0.38 -0.2
1,301,039 - SGL_RS07970 0.38 +0.2
1,301,039 - SGL_RS07970 0.38 +0.2
1,301,039 - SGL_RS07970 0.38 -0.1
1,301,109 + SGL_RS07970 0.45 -0.1
1,301,121 + SGL_RS07970 0.46 +1.0
1,301,137 + SGL_RS07970 0.48 -0.0
1,301,137 - SGL_RS07970 0.48 -0.3
1,301,182 - SGL_RS07970 0.52 -0.1
1,301,197 - SGL_RS07970 0.54 +0.3
1,301,224 + SGL_RS07970 0.57 -1.1
1,301,424 + SGL_RS07970 0.77 +0.1
1,301,429 + SGL_RS07970 0.77 +0.4
1,301,457 - SGL_RS07970 0.80 +0.1
1,301,462 - SGL_RS07970 0.80 +0.6
1,301,538 - SGL_RS07970 0.88 -0.2
1,301,572 - +1.2
1,301,579 + -0.3

Or see this region's nucleotide sequence