Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07935 and SGL_RS07940 are separated by 1 nucleotides SGL_RS07940 and SGL_RS07945 are separated by 98 nucleotides SGL_RS07945 and SGL_RS07950 are separated by 143 nucleotides
SGL_RS07935: SGL_RS07935 - hypothetical protein, at 1,295,568 to 1,296,380
_RS07935
SGL_RS07940: SGL_RS07940 - type II secretion system protein, at 1,296,382 to 1,296,894
_RS07940
SGL_RS07945: SGL_RS07945 - type IV pilin-like G/H family protein, at 1,296,993 to 1,297,499
_RS07945
SGL_RS07950: SGL_RS07950 - methyltransferase domain-containing protein, at 1,297,643 to 1,298,965
_RS07950
Position (kb) 1296
1297
1298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 1296.079 kb on - strand, within SGL_RS07935 at 1296.398 kb on - strand at 1296.474 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1296.773 kb on + strand, within SGL_RS07940 at 1297.108 kb on - strand, within SGL_RS07945 at 1297.163 kb on - strand, within SGL_RS07945 at 1297.366 kb on + strand, within SGL_RS07945 at 1297.562 kb on - strand at 1297.654 kb on - strand at 1297.700 kb on - strand at 1297.702 kb on + strand at 1297.732 kb on + strand at 1297.740 kb on - strand at 1297.788 kb on + strand, within SGL_RS07950 at 1297.802 kb on - strand, within SGL_RS07950 at 1297.973 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.005 kb on - strand, within SGL_RS07950 at 1298.022 kb on + strand, within SGL_RS07950 at 1298.320 kb on + strand, within SGL_RS07950 at 1298.464 kb on + strand, within SGL_RS07950
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,296,079 - SGL_RS07935 0.63 -3.0 1,296,398 - +0.7 1,296,474 + SGL_RS07940 0.18 +0.4 1,296,773 + SGL_RS07940 0.76 -0.9 1,296,773 + SGL_RS07940 0.76 +0.5 1,297,108 - SGL_RS07945 0.23 +8.3 1,297,163 - SGL_RS07945 0.34 +7.8 1,297,366 + SGL_RS07945 0.74 -0.9 1,297,562 - +7.5 1,297,654 - +0.3 1,297,700 - +0.4 1,297,702 + -0.1 1,297,732 + +0.3 1,297,740 - +0.5 1,297,788 + SGL_RS07950 0.11 -0.1 1,297,802 - SGL_RS07950 0.12 +0.2 1,297,973 - SGL_RS07950 0.25 +0.6 1,298,005 - SGL_RS07950 0.27 +0.2 1,298,005 - SGL_RS07950 0.27 -0.2 1,298,022 + SGL_RS07950 0.29 -1.1 1,298,320 + SGL_RS07950 0.51 +0.3 1,298,464 + SGL_RS07950 0.62 -0.5
Or see this region's nucleotide sequence