Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07890

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07880 and SGL_RS07885 are separated by 161 nucleotidesSGL_RS07885 and SGL_RS07890 overlap by 35 nucleotidesSGL_RS07890 and SGL_RS07895 overlap by 32 nucleotidesSGL_RS07895 and SGL_RS20140 are separated by 29 nucleotidesSGL_RS20140 and SGL_RS07900 are separated by 115 nucleotides SGL_RS07880: SGL_RS07880 - glutamyl-tRNA reductase, at 1,284,660 to 1,285,943 _RS07880 SGL_RS07885: SGL_RS07885 - hypothetical protein, at 1,286,105 to 1,286,902 _RS07885 SGL_RS07890: SGL_RS07890 - ABC transporter substrate-binding protein, at 1,286,868 to 1,288,763 _RS07890 SGL_RS07895: SGL_RS07895 - hypothetical protein, at 1,288,732 to 1,289,112 _RS07895 SGL_RS20140: SGL_RS20140 - hypothetical protein, at 1,289,142 to 1,289,273 _RS20140 SGL_RS07900: SGL_RS07900 - DUF362 domain-containing protein, at 1,289,389 to 1,290,354 _RS07900 Position (kb) 1286 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1at 1286.095 kb on + strandat 1286.095 kb on + strandat 1286.103 kb on - strandat 1286.109 kb on + strandat 1286.156 kb on + strandat 1286.164 kb on - strandat 1286.195 kb on + strand, within SGL_RS07885at 1286.247 kb on - strand, within SGL_RS07885at 1286.289 kb on - strand, within SGL_RS07885at 1286.461 kb on + strand, within SGL_RS07885at 1286.615 kb on + strand, within SGL_RS07885at 1286.756 kb on - strand, within SGL_RS07885at 1286.911 kb on + strandat 1287.056 kb on - strandat 1287.147 kb on + strand, within SGL_RS07890at 1287.160 kb on - strand, within SGL_RS07890at 1287.160 kb on - strand, within SGL_RS07890at 1287.167 kb on + strand, within SGL_RS07890at 1287.176 kb on + strand, within SGL_RS07890at 1287.185 kb on - strand, within SGL_RS07890at 1287.203 kb on - strand, within SGL_RS07890at 1287.840 kb on + strand, within SGL_RS07890at 1287.906 kb on + strand, within SGL_RS07890at 1288.166 kb on - strand, within SGL_RS07890at 1288.355 kb on + strand, within SGL_RS07890at 1288.382 kb on + strand, within SGL_RS07890at 1288.390 kb on - strand, within SGL_RS07890at 1288.488 kb on - strand, within SGL_RS07890at 1288.782 kb on + strand, within SGL_RS07895at 1288.949 kb on + strand, within SGL_RS07895at 1289.017 kb on + strand, within SGL_RS07895at 1289.025 kb on - strand, within SGL_RS07895at 1289.050 kb on - strand, within SGL_RS07895at 1289.116 kb on - strandat 1289.223 kb on + strand, within SGL_RS20140at 1289.223 kb on + strand, within SGL_RS20140at 1289.231 kb on - strand, within SGL_RS20140at 1289.473 kb on - strandat 1289.473 kb on - strandat 1289.473 kb on - strandat 1289.538 kb on - strand, within SGL_RS07900at 1289.556 kb on - strand, within SGL_RS07900at 1289.588 kb on - strand, within SGL_RS07900at 1289.600 kb on + strand, within SGL_RS07900at 1289.743 kb on - strand, within SGL_RS07900

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,286,095 + -0.5
1,286,095 + -0.8
1,286,103 - +0.0
1,286,109 + -1.2
1,286,156 + -0.1
1,286,164 - -0.6
1,286,195 + SGL_RS07885 0.11 +0.2
1,286,247 - SGL_RS07885 0.18 +0.4
1,286,289 - SGL_RS07885 0.23 -0.4
1,286,461 + SGL_RS07885 0.45 -0.2
1,286,615 + SGL_RS07885 0.64 -0.3
1,286,756 - SGL_RS07885 0.82 -0.1
1,286,911 + -1.9
1,287,056 - +1.1
1,287,147 + SGL_RS07890 0.15 +0.4
1,287,160 - SGL_RS07890 0.15 +1.0
1,287,160 - SGL_RS07890 0.15 +0.6
1,287,167 + SGL_RS07890 0.16 +0.9
1,287,176 + SGL_RS07890 0.16 +1.3
1,287,185 - SGL_RS07890 0.17 +1.3
1,287,203 - SGL_RS07890 0.18 +0.6
1,287,840 + SGL_RS07890 0.51 +0.8
1,287,906 + SGL_RS07890 0.55 +1.0
1,288,166 - SGL_RS07890 0.68 +0.8
1,288,355 + SGL_RS07890 0.78 +0.9
1,288,382 + SGL_RS07890 0.80 +1.4
1,288,390 - SGL_RS07890 0.80 -0.1
1,288,488 - SGL_RS07890 0.85 +0.6
1,288,782 + SGL_RS07895 0.13 +0.3
1,288,949 + SGL_RS07895 0.57 +0.6
1,289,017 + SGL_RS07895 0.75 +0.1
1,289,025 - SGL_RS07895 0.77 +0.1
1,289,050 - SGL_RS07895 0.83 -0.2
1,289,116 - -0.0
1,289,223 + SGL_RS20140 0.61 +0.1
1,289,223 + SGL_RS20140 0.61 +0.1
1,289,231 - SGL_RS20140 0.67 +0.5
1,289,473 - +1.2
1,289,473 - -0.2
1,289,473 - -0.1
1,289,538 - SGL_RS07900 0.15 -0.5
1,289,556 - SGL_RS07900 0.17 +0.2
1,289,588 - SGL_RS07900 0.21 -1.3
1,289,600 + SGL_RS07900 0.22 -0.1
1,289,743 - SGL_RS07900 0.37 +0.1

Or see this region's nucleotide sequence