Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07880 and SGL_RS07885 are separated by 161 nucleotides SGL_RS07885 and SGL_RS07890 overlap by 35 nucleotides SGL_RS07890 and SGL_RS07895 overlap by 32 nucleotides SGL_RS07895 and SGL_RS20140 are separated by 29 nucleotides SGL_RS20140 and SGL_RS07900 are separated by 115 nucleotides
SGL_RS07880: SGL_RS07880 - glutamyl-tRNA reductase, at 1,284,660 to 1,285,943
_RS07880
SGL_RS07885: SGL_RS07885 - hypothetical protein, at 1,286,105 to 1,286,902
_RS07885
SGL_RS07890: SGL_RS07890 - ABC transporter substrate-binding protein, at 1,286,868 to 1,288,763
_RS07890
SGL_RS07895: SGL_RS07895 - hypothetical protein, at 1,288,732 to 1,289,112
_RS07895
SGL_RS20140: SGL_RS20140 - hypothetical protein, at 1,289,142 to 1,289,273
_RS20140
SGL_RS07900: SGL_RS07900 - DUF362 domain-containing protein, at 1,289,389 to 1,290,354
_RS07900
Position (kb)
1286
1287
1288
1289 Strain fitness (log2 ratio)
-2
-1
0
1 at 1286.095 kb on + strand at 1286.095 kb on + strand at 1286.103 kb on - strand at 1286.109 kb on + strand at 1286.156 kb on + strand at 1286.164 kb on - strand at 1286.195 kb on + strand, within SGL_RS07885 at 1286.247 kb on - strand, within SGL_RS07885 at 1286.289 kb on - strand, within SGL_RS07885 at 1286.461 kb on + strand, within SGL_RS07885 at 1286.615 kb on + strand, within SGL_RS07885 at 1286.756 kb on - strand, within SGL_RS07885 at 1286.911 kb on + strand at 1287.056 kb on - strand at 1287.147 kb on + strand, within SGL_RS07890 at 1287.160 kb on - strand, within SGL_RS07890 at 1287.160 kb on - strand, within SGL_RS07890 at 1287.167 kb on + strand, within SGL_RS07890 at 1287.176 kb on + strand, within SGL_RS07890 at 1287.185 kb on - strand, within SGL_RS07890 at 1287.203 kb on - strand, within SGL_RS07890 at 1287.840 kb on + strand, within SGL_RS07890 at 1287.906 kb on + strand, within SGL_RS07890 at 1288.166 kb on - strand, within SGL_RS07890 at 1288.355 kb on + strand, within SGL_RS07890 at 1288.382 kb on + strand, within SGL_RS07890 at 1288.390 kb on - strand, within SGL_RS07890 at 1288.488 kb on - strand, within SGL_RS07890 at 1288.782 kb on + strand, within SGL_RS07895 at 1288.949 kb on + strand, within SGL_RS07895 at 1289.017 kb on + strand, within SGL_RS07895 at 1289.025 kb on - strand, within SGL_RS07895 at 1289.050 kb on - strand, within SGL_RS07895 at 1289.116 kb on - strand at 1289.223 kb on + strand, within SGL_RS20140 at 1289.223 kb on + strand, within SGL_RS20140 at 1289.231 kb on - strand, within SGL_RS20140 at 1289.473 kb on - strand at 1289.473 kb on - strand at 1289.473 kb on - strand at 1289.538 kb on - strand, within SGL_RS07900 at 1289.556 kb on - strand, within SGL_RS07900 at 1289.588 kb on - strand, within SGL_RS07900 at 1289.600 kb on + strand, within SGL_RS07900 at 1289.743 kb on - strand, within SGL_RS07900
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,286,095 + -0.5 1,286,095 + -0.8 1,286,103 - +0.0 1,286,109 + -1.2 1,286,156 + -0.1 1,286,164 - -0.6 1,286,195 + SGL_RS07885 0.11 +0.2 1,286,247 - SGL_RS07885 0.18 +0.4 1,286,289 - SGL_RS07885 0.23 -0.4 1,286,461 + SGL_RS07885 0.45 -0.2 1,286,615 + SGL_RS07885 0.64 -0.3 1,286,756 - SGL_RS07885 0.82 -0.1 1,286,911 + -1.9 1,287,056 - +1.1 1,287,147 + SGL_RS07890 0.15 +0.4 1,287,160 - SGL_RS07890 0.15 +1.0 1,287,160 - SGL_RS07890 0.15 +0.6 1,287,167 + SGL_RS07890 0.16 +0.9 1,287,176 + SGL_RS07890 0.16 +1.3 1,287,185 - SGL_RS07890 0.17 +1.3 1,287,203 - SGL_RS07890 0.18 +0.6 1,287,840 + SGL_RS07890 0.51 +0.8 1,287,906 + SGL_RS07890 0.55 +1.0 1,288,166 - SGL_RS07890 0.68 +0.8 1,288,355 + SGL_RS07890 0.78 +0.9 1,288,382 + SGL_RS07890 0.80 +1.4 1,288,390 - SGL_RS07890 0.80 -0.1 1,288,488 - SGL_RS07890 0.85 +0.6 1,288,782 + SGL_RS07895 0.13 +0.3 1,288,949 + SGL_RS07895 0.57 +0.6 1,289,017 + SGL_RS07895 0.75 +0.1 1,289,025 - SGL_RS07895 0.77 +0.1 1,289,050 - SGL_RS07895 0.83 -0.2 1,289,116 - -0.0 1,289,223 + SGL_RS20140 0.61 +0.1 1,289,223 + SGL_RS20140 0.61 +0.1 1,289,231 - SGL_RS20140 0.67 +0.5 1,289,473 - +1.2 1,289,473 - -0.2 1,289,473 - -0.1 1,289,538 - SGL_RS07900 0.15 -0.5 1,289,556 - SGL_RS07900 0.17 +0.2 1,289,588 - SGL_RS07900 0.21 -1.3 1,289,600 + SGL_RS07900 0.22 -0.1 1,289,743 - SGL_RS07900 0.37 +0.1
Or see this region's nucleotide sequence