Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07700

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19585 and SGL_RS07695 are separated by 125 nucleotidesSGL_RS07695 and SGL_RS07700 are separated by 85 nucleotidesSGL_RS07700 and SGL_RS07705 are separated by 32 nucleotides SGL_RS19585: SGL_RS19585 - hypothetical protein, at 1,244,438 to 1,244,605 _RS19585 SGL_RS07695: SGL_RS07695 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK, at 1,244,731 to 1,245,309 _RS07695 SGL_RS07700: SGL_RS07700 - ribosome silencing factor, at 1,245,395 to 1,245,859 _RS07700 SGL_RS07705: SGL_RS07705 - hypothetical protein, at 1,245,892 to 1,247,052 _RS07705 Position (kb) 1245 1246Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1244.414 kb on - strandat 1244.552 kb on + strand, within SGL_RS19585at 1244.621 kb on + strandat 1244.628 kb on - strandat 1244.835 kb on - strand, within SGL_RS07695at 1244.882 kb on - strand, within SGL_RS07695at 1244.989 kb on - strand, within SGL_RS07695at 1245.080 kb on - strand, within SGL_RS07695at 1245.094 kb on + strand, within SGL_RS07695at 1245.125 kb on + strand, within SGL_RS07695at 1245.141 kb on + strand, within SGL_RS07695at 1245.148 kb on + strand, within SGL_RS07695at 1245.207 kb on + strand, within SGL_RS07695at 1245.339 kb on + strandat 1245.730 kb on - strand, within SGL_RS07700at 1245.854 kb on + strandat 1245.861 kb on - strandat 1246.125 kb on + strand, within SGL_RS07705at 1246.326 kb on - strand, within SGL_RS07705at 1246.336 kb on + strand, within SGL_RS07705at 1246.381 kb on + strand, within SGL_RS07705at 1246.389 kb on - strand, within SGL_RS07705at 1246.644 kb on - strand, within SGL_RS07705at 1246.646 kb on + strand, within SGL_RS07705at 1246.726 kb on + strand, within SGL_RS07705at 1246.734 kb on - strand, within SGL_RS07705

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,244,414 - -4.2
1,244,552 + SGL_RS19585 0.68 -6.9
1,244,621 + -1.2
1,244,628 - -0.2
1,244,835 - SGL_RS07695 0.18 -0.3
1,244,882 - SGL_RS07695 0.26 -0.3
1,244,989 - SGL_RS07695 0.45 +0.5
1,245,080 - SGL_RS07695 0.60 +0.4
1,245,094 + SGL_RS07695 0.63 -0.1
1,245,125 + SGL_RS07695 0.68 -0.2
1,245,141 + SGL_RS07695 0.71 -0.0
1,245,148 + SGL_RS07695 0.72 -1.2
1,245,207 + SGL_RS07695 0.82 +0.4
1,245,339 + +0.4
1,245,730 - SGL_RS07700 0.72 +1.0
1,245,854 + +0.3
1,245,861 - -0.4
1,246,125 + SGL_RS07705 0.20 -0.6
1,246,326 - SGL_RS07705 0.37 +0.3
1,246,336 + SGL_RS07705 0.38 -0.6
1,246,381 + SGL_RS07705 0.42 -0.9
1,246,389 - SGL_RS07705 0.43 -0.2
1,246,644 - SGL_RS07705 0.65 -0.3
1,246,646 + SGL_RS07705 0.65 -0.6
1,246,726 + SGL_RS07705 0.72 -1.4
1,246,734 - SGL_RS07705 0.73 -1.2

Or see this region's nucleotide sequence