Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07655 and SGL_RS07660 are separated by 167 nucleotides SGL_RS07660 and SGL_RS07665 are separated by 106 nucleotides SGL_RS07665 and SGL_RS07670 are separated by 148 nucleotides
SGL_RS07655: SGL_RS07655 - phosphoglucosamine mutase, at 1,237,543 to 1,238,988
_RS07655
SGL_RS07660: SGL_RS07660 - ferredoxin family protein, at 1,239,156 to 1,239,383
_RS07660
SGL_RS07665: SGL_RS07665 - ABC transporter ATP-binding protein, at 1,239,490 to 1,240,212
_RS07665
SGL_RS07670: SGL_RS07670 - riboflavin biosynthesis protein RibF, at 1,240,361 to 1,241,302
_RS07670
Position (kb)
1239
1240 Strain fitness (log2 ratio)
-2
-1
0
1 at 1238.217 kb on + strand, within SGL_RS07655 at 1238.305 kb on - strand, within SGL_RS07655 at 1238.320 kb on + strand, within SGL_RS07655 at 1238.354 kb on + strand, within SGL_RS07655 at 1238.454 kb on + strand, within SGL_RS07655 at 1238.456 kb on + strand, within SGL_RS07655 at 1238.462 kb on - strand, within SGL_RS07655 at 1238.462 kb on - strand, within SGL_RS07655 at 1238.462 kb on - strand, within SGL_RS07655 at 1238.462 kb on - strand, within SGL_RS07655 at 1238.462 kb on - strand, within SGL_RS07655 at 1238.514 kb on + strand, within SGL_RS07655 at 1238.631 kb on - strand, within SGL_RS07655 at 1238.694 kb on + strand, within SGL_RS07655 at 1238.694 kb on + strand, within SGL_RS07655 at 1238.697 kb on - strand, within SGL_RS07655 at 1238.700 kb on + strand, within SGL_RS07655 at 1238.702 kb on - strand, within SGL_RS07655 at 1238.702 kb on - strand, within SGL_RS07655 at 1238.702 kb on - strand, within SGL_RS07655 at 1238.718 kb on - strand, within SGL_RS07655 at 1238.718 kb on - strand, within SGL_RS07655 at 1239.102 kb on - strand at 1239.335 kb on - strand, within SGL_RS07660 at 1239.386 kb on - strand at 1239.386 kb on - strand at 1239.494 kb on - strand at 1239.516 kb on - strand at 1239.583 kb on + strand, within SGL_RS07665 at 1239.640 kb on + strand, within SGL_RS07665 at 1239.830 kb on + strand, within SGL_RS07665 at 1239.830 kb on + strand, within SGL_RS07665 at 1239.830 kb on + strand, within SGL_RS07665 at 1239.838 kb on - strand, within SGL_RS07665 at 1239.940 kb on - strand, within SGL_RS07665 at 1239.944 kb on + strand, within SGL_RS07665 at 1239.985 kb on + strand, within SGL_RS07665 at 1239.993 kb on - strand, within SGL_RS07665 at 1240.094 kb on + strand, within SGL_RS07665 at 1240.265 kb on - strand at 1240.351 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,238,217 + SGL_RS07655 0.47 +0.5 1,238,305 - SGL_RS07655 0.53 +0.7 1,238,320 + SGL_RS07655 0.54 +1.2 1,238,354 + SGL_RS07655 0.56 +0.7 1,238,454 + SGL_RS07655 0.63 +0.8 1,238,456 + SGL_RS07655 0.63 +0.1 1,238,462 - SGL_RS07655 0.64 +0.8 1,238,462 - SGL_RS07655 0.64 +0.4 1,238,462 - SGL_RS07655 0.64 +0.2 1,238,462 - SGL_RS07655 0.64 +0.2 1,238,462 - SGL_RS07655 0.64 +0.8 1,238,514 + SGL_RS07655 0.67 +0.7 1,238,631 - SGL_RS07655 0.75 +0.9 1,238,694 + SGL_RS07655 0.80 +1.0 1,238,694 + SGL_RS07655 0.80 -0.1 1,238,697 - SGL_RS07655 0.80 +1.1 1,238,700 + SGL_RS07655 0.80 +0.2 1,238,702 - SGL_RS07655 0.80 -0.1 1,238,702 - SGL_RS07655 0.80 +0.3 1,238,702 - SGL_RS07655 0.80 +0.9 1,238,718 - SGL_RS07655 0.81 -0.6 1,238,718 - SGL_RS07655 0.81 +0.4 1,239,102 - -0.3 1,239,335 - SGL_RS07660 0.79 +1.5 1,239,386 - -0.2 1,239,386 - +0.1 1,239,494 - +0.1 1,239,516 - -1.8 1,239,583 + SGL_RS07665 0.13 -0.2 1,239,640 + SGL_RS07665 0.21 -0.7 1,239,830 + SGL_RS07665 0.47 -0.1 1,239,830 + SGL_RS07665 0.47 -1.7 1,239,830 + SGL_RS07665 0.47 -0.5 1,239,838 - SGL_RS07665 0.48 -0.7 1,239,940 - SGL_RS07665 0.62 -0.2 1,239,944 + SGL_RS07665 0.63 -0.1 1,239,985 + SGL_RS07665 0.68 -2.0 1,239,993 - SGL_RS07665 0.70 -0.7 1,240,094 + SGL_RS07665 0.84 -0.4 1,240,265 - +0.4 1,240,351 + +0.1
Or see this region's nucleotide sequence