Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07650

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07645 and SGL_RS07650 are separated by 259 nucleotidesSGL_RS07650 and SGL_RS07655 are separated by 93 nucleotides SGL_RS07645: SGL_RS07645 - homoserine kinase, at 1,235,136 to 1,236,056 _RS07645 SGL_RS07650: SGL_RS07650 - aminoglycoside phosphotransferase family protein, at 1,236,316 to 1,237,449 _RS07650 SGL_RS07655: SGL_RS07655 - phosphoglucosamine mutase, at 1,237,543 to 1,238,988 _RS07655 Position (kb) 1236 1237 1238Strain fitness (log2 ratio) -1 0 1 2at 1236.109 kb on - strandat 1236.488 kb on + strand, within SGL_RS07650at 1236.588 kb on - strand, within SGL_RS07650at 1236.724 kb on - strand, within SGL_RS07650at 1236.726 kb on + strand, within SGL_RS07650at 1236.734 kb on - strand, within SGL_RS07650at 1236.753 kb on - strand, within SGL_RS07650at 1236.856 kb on - strand, within SGL_RS07650at 1237.079 kb on - strand, within SGL_RS07650at 1237.081 kb on + strand, within SGL_RS07650at 1237.090 kb on - strand, within SGL_RS07650at 1237.480 kb on + strandat 1237.579 kb on - strandat 1237.579 kb on - strandat 1237.636 kb on + strandat 1237.705 kb on + strand, within SGL_RS07655at 1237.920 kb on - strand, within SGL_RS07655at 1238.217 kb on + strand, within SGL_RS07655at 1238.305 kb on - strand, within SGL_RS07655at 1238.320 kb on + strand, within SGL_RS07655at 1238.354 kb on + strand, within SGL_RS07655

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,236,109 - -1.3
1,236,488 + SGL_RS07650 0.15 +1.7
1,236,588 - SGL_RS07650 0.24 +1.4
1,236,724 - SGL_RS07650 0.36 +0.5
1,236,726 + SGL_RS07650 0.36 +1.7
1,236,734 - SGL_RS07650 0.37 +1.6
1,236,753 - SGL_RS07650 0.39 +1.7
1,236,856 - SGL_RS07650 0.48 +1.6
1,237,079 - SGL_RS07650 0.67 +1.4
1,237,081 + SGL_RS07650 0.67 +1.8
1,237,090 - SGL_RS07650 0.68 +0.4
1,237,480 + -0.7
1,237,579 - +0.6
1,237,579 - +0.8
1,237,636 + +0.0
1,237,705 + SGL_RS07655 0.11 +0.4
1,237,920 - SGL_RS07655 0.26 +0.8
1,238,217 + SGL_RS07655 0.47 +0.5
1,238,305 - SGL_RS07655 0.53 +0.7
1,238,320 + SGL_RS07655 0.54 +1.2
1,238,354 + SGL_RS07655 0.56 +0.7

Or see this region's nucleotide sequence