Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07495

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07485 and SGL_RS07490 are separated by 26 nucleotidesSGL_RS07490 and SGL_RS07495 are separated by 51 nucleotidesSGL_RS07495 and SGL_RS07500 are separated by 198 nucleotidesSGL_RS07500 and SGL_RS07505 are separated by 12 nucleotides SGL_RS07485: SGL_RS07485 - anthranilate phosphoribosyltransferase, at 1,206,947 to 1,207,993 _RS07485 SGL_RS07490: SGL_RS07490 - deoxyribose-phosphate aldolase, at 1,208,020 to 1,208,697 _RS07490 SGL_RS07495: SGL_RS07495 - GH116 family glycosyl hydrolase, at 1,208,749 to 1,211,202 _RS07495 SGL_RS07500: SGL_RS07500 - UPF0175 family protein, at 1,211,401 to 1,211,625 _RS07500 SGL_RS07505: SGL_RS07505 - Rpn family recombination-promoting nuclease/putative transposase, at 1,211,638 to 1,212,420 _RS07505 Position (kb) 1208 1209 1210 1211 1212Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1208.114 kb on + strand, within SGL_RS07490at 1208.145 kb on + strand, within SGL_RS07490at 1208.158 kb on - strand, within SGL_RS07490at 1208.193 kb on + strand, within SGL_RS07490at 1208.198 kb on - strand, within SGL_RS07490at 1208.236 kb on + strand, within SGL_RS07490at 1208.314 kb on + strand, within SGL_RS07490at 1208.336 kb on - strand, within SGL_RS07490at 1208.452 kb on - strand, within SGL_RS07490at 1208.562 kb on + strand, within SGL_RS07490at 1208.590 kb on + strand, within SGL_RS07490at 1208.615 kb on + strand, within SGL_RS07490at 1208.622 kb on + strand, within SGL_RS07490at 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.641 kb on + strandat 1208.648 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.649 kb on - strandat 1208.900 kb on - strandat 1209.096 kb on - strand, within SGL_RS07495at 1209.122 kb on + strand, within SGL_RS07495at 1209.152 kb on + strand, within SGL_RS07495at 1209.231 kb on + strand, within SGL_RS07495at 1209.301 kb on + strand, within SGL_RS07495at 1209.422 kb on - strand, within SGL_RS07495at 1209.458 kb on - strand, within SGL_RS07495at 1209.482 kb on - strand, within SGL_RS07495at 1209.547 kb on + strand, within SGL_RS07495at 1209.555 kb on - strand, within SGL_RS07495at 1209.566 kb on - strand, within SGL_RS07495at 1209.666 kb on + strand, within SGL_RS07495at 1209.666 kb on + strand, within SGL_RS07495at 1209.686 kb on + strand, within SGL_RS07495at 1209.847 kb on + strand, within SGL_RS07495at 1209.881 kb on - strand, within SGL_RS07495at 1209.946 kb on + strand, within SGL_RS07495at 1209.985 kb on - strand, within SGL_RS07495at 1210.100 kb on + strand, within SGL_RS07495at 1210.119 kb on - strand, within SGL_RS07495at 1210.408 kb on + strand, within SGL_RS07495at 1210.478 kb on + strand, within SGL_RS07495at 1210.483 kb on + strand, within SGL_RS07495at 1210.553 kb on - strand, within SGL_RS07495at 1210.649 kb on - strand, within SGL_RS07495at 1210.654 kb on + strand, within SGL_RS07495at 1210.707 kb on - strand, within SGL_RS07495at 1210.707 kb on - strand, within SGL_RS07495at 1210.707 kb on - strand, within SGL_RS07495at 1210.817 kb on + strand, within SGL_RS07495at 1210.841 kb on - strand, within SGL_RS07495at 1210.901 kb on - strand, within SGL_RS07495at 1210.915 kb on + strand, within SGL_RS07495at 1211.090 kb on - strandat 1211.094 kb on + strandat 1211.102 kb on - strandat 1211.120 kb on + strandat 1211.120 kb on + strandat 1211.120 kb on + strandat 1211.128 kb on - strandat 1211.128 kb on - strandat 1211.200 kb on - strandat 1211.224 kb on + strandat 1211.282 kb on + strandat 1211.282 kb on + strandat 1211.293 kb on + strandat 1211.301 kb on - strandat 1211.550 kb on - strand, within SGL_RS07500

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,208,114 + SGL_RS07490 0.14 -0.9
1,208,145 + SGL_RS07490 0.18 +0.3
1,208,158 - SGL_RS07490 0.20 +0.2
1,208,193 + SGL_RS07490 0.26 -0.1
1,208,198 - SGL_RS07490 0.26 +0.3
1,208,236 + SGL_RS07490 0.32 +0.1
1,208,314 + SGL_RS07490 0.43 -0.2
1,208,336 - SGL_RS07490 0.47 -0.4
1,208,452 - SGL_RS07490 0.64 +0.2
1,208,562 + SGL_RS07490 0.80 +0.3
1,208,590 + SGL_RS07490 0.84 +0.5
1,208,615 + SGL_RS07490 0.88 -0.0
1,208,622 + SGL_RS07490 0.89 +1.7
1,208,641 + -0.3
1,208,641 + -0.1
1,208,641 + +0.3
1,208,641 + -0.4
1,208,641 + -0.0
1,208,641 + +1.5
1,208,641 + +0.4
1,208,641 + -0.7
1,208,648 - +0.2
1,208,649 - +0.4
1,208,649 - -1.6
1,208,649 - +0.0
1,208,649 - -0.0
1,208,649 - -0.3
1,208,649 - +0.2
1,208,649 - +0.2
1,208,649 - -0.0
1,208,649 - +0.2
1,208,900 - +4.1
1,209,096 - SGL_RS07495 0.14 +3.1
1,209,122 + SGL_RS07495 0.15 +4.3
1,209,152 + SGL_RS07495 0.16 +3.0
1,209,231 + SGL_RS07495 0.20 +3.4
1,209,301 + SGL_RS07495 0.22 +3.7
1,209,422 - SGL_RS07495 0.27 +3.4
1,209,458 - SGL_RS07495 0.29 +3.2
1,209,482 - SGL_RS07495 0.30 +3.8
1,209,547 + SGL_RS07495 0.33 +5.2
1,209,555 - SGL_RS07495 0.33 +3.7
1,209,566 - SGL_RS07495 0.33 +2.9
1,209,666 + SGL_RS07495 0.37 +3.2
1,209,666 + SGL_RS07495 0.37 +3.3
1,209,686 + SGL_RS07495 0.38 +3.6
1,209,847 + SGL_RS07495 0.45 +3.6
1,209,881 - SGL_RS07495 0.46 +3.6
1,209,946 + SGL_RS07495 0.49 +3.4
1,209,985 - SGL_RS07495 0.50 +3.7
1,210,100 + SGL_RS07495 0.55 +3.9
1,210,119 - SGL_RS07495 0.56 +3.2
1,210,408 + SGL_RS07495 0.68 +3.1
1,210,478 + SGL_RS07495 0.70 +3.8
1,210,483 + SGL_RS07495 0.71 +3.5
1,210,553 - SGL_RS07495 0.74 +3.4
1,210,649 - SGL_RS07495 0.77 +2.7
1,210,654 + SGL_RS07495 0.78 +3.5
1,210,707 - SGL_RS07495 0.80 +3.9
1,210,707 - SGL_RS07495 0.80 +3.4
1,210,707 - SGL_RS07495 0.80 +3.4
1,210,817 + SGL_RS07495 0.84 +3.1
1,210,841 - SGL_RS07495 0.85 +2.5
1,210,901 - SGL_RS07495 0.88 +3.3
1,210,915 + SGL_RS07495 0.88 +3.3
1,211,090 - +3.2
1,211,094 + +3.3
1,211,102 - +4.0
1,211,120 + +3.4
1,211,120 + +3.6
1,211,120 + +3.1
1,211,128 - +3.7
1,211,128 - +3.2
1,211,200 - +2.8
1,211,224 + +0.8
1,211,282 + -1.5
1,211,282 + +0.0
1,211,293 + -0.6
1,211,301 - +0.3
1,211,550 - SGL_RS07500 0.66 -0.0

Or see this region's nucleotide sequence