Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07300

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07290 and SGL_RS07295 are separated by 180 nucleotidesSGL_RS07295 and SGL_RS07300 are separated by 31 nucleotidesSGL_RS07300 and SGL_RS07305 are separated by 53 nucleotides SGL_RS07290: SGL_RS07290 - M67 family metallopeptidase, at 1,160,787 to 1,161,260 _RS07290 SGL_RS07295: SGL_RS07295 - hypothetical protein, at 1,161,441 to 1,161,824 _RS07295 SGL_RS07300: SGL_RS07300 - site-2 protease family protein, at 1,161,856 to 1,163,367 _RS07300 SGL_RS07305: SGL_RS07305 - N-acetylmuramic acid 6-phosphate etherase, at 1,163,421 to 1,164,338 _RS07305 Position (kb) 1161 1162 1163 1164Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1160.862 kb on - strand, within SGL_RS07290at 1160.931 kb on - strand, within SGL_RS07290at 1161.040 kb on - strand, within SGL_RS07290at 1161.118 kb on - strand, within SGL_RS07290at 1161.538 kb on + strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.584 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.740 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295at 1161.862 kb on + strandat 1161.874 kb on + strandat 1161.929 kb on - strandat 1161.983 kb on - strandat 1162.028 kb on + strand, within SGL_RS07300at 1162.060 kb on - strand, within SGL_RS07300at 1162.128 kb on - strand, within SGL_RS07300at 1162.212 kb on - strand, within SGL_RS07300at 1162.248 kb on - strand, within SGL_RS07300at 1162.268 kb on - strand, within SGL_RS07300at 1162.815 kb on - strand, within SGL_RS07300at 1163.031 kb on - strand, within SGL_RS07300at 1163.277 kb on - strandat 1163.301 kb on - strandat 1163.328 kb on + strandat 1163.419 kb on + strandat 1163.574 kb on + strand, within SGL_RS07305at 1163.861 kb on - strand, within SGL_RS07305at 1163.873 kb on - strand, within SGL_RS07305at 1163.888 kb on - strand, within SGL_RS07305at 1163.960 kb on - strand, within SGL_RS07305at 1163.987 kb on + strand, within SGL_RS07305at 1164.000 kb on + strand, within SGL_RS07305at 1164.112 kb on + strand, within SGL_RS07305

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,160,862 - SGL_RS07290 0.16 -0.1
1,160,931 - SGL_RS07290 0.30 +0.3
1,161,040 - SGL_RS07290 0.53 -0.3
1,161,118 - SGL_RS07290 0.70 -0.3
1,161,538 + SGL_RS07295 0.25 +0.8
1,161,572 - SGL_RS07295 0.34 +0.2
1,161,572 - SGL_RS07295 0.34 +0.5
1,161,584 + SGL_RS07295 0.37 +0.2
1,161,732 + SGL_RS07295 0.76 +0.6
1,161,732 + SGL_RS07295 0.76 +0.4
1,161,740 - SGL_RS07295 0.78 +0.1
1,161,758 - SGL_RS07295 0.83 +0.1
1,161,758 - SGL_RS07295 0.83 +1.4
1,161,862 + +2.0
1,161,874 + +1.1
1,161,929 - +2.2
1,161,983 - +2.7
1,162,028 + SGL_RS07300 0.11 +4.8
1,162,060 - SGL_RS07300 0.13 +2.4
1,162,128 - SGL_RS07300 0.18 +2.5
1,162,212 - SGL_RS07300 0.24 +1.8
1,162,248 - SGL_RS07300 0.26 +1.6
1,162,268 - SGL_RS07300 0.27 +2.4
1,162,815 - SGL_RS07300 0.63 +2.3
1,163,031 - SGL_RS07300 0.78 +2.1
1,163,277 - +1.9
1,163,301 - +2.8
1,163,328 + +1.9
1,163,419 + +1.0
1,163,574 + SGL_RS07305 0.17 +0.2
1,163,861 - SGL_RS07305 0.48 +1.7
1,163,873 - SGL_RS07305 0.49 +1.3
1,163,888 - SGL_RS07305 0.51 +2.1
1,163,960 - SGL_RS07305 0.59 +1.5
1,163,987 + SGL_RS07305 0.62 +0.4
1,164,000 + SGL_RS07305 0.63 +1.6
1,164,112 + SGL_RS07305 0.75 +1.7

Or see this region's nucleotide sequence