Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07175

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07165 and SGL_RS07170 are separated by 97 nucleotidesSGL_RS07170 and SGL_RS07175 are separated by 93 nucleotidesSGL_RS07175 and SGL_RS07180 are separated by 22 nucleotides SGL_RS07165: SGL_RS07165 - M23 family metallopeptidase, at 1,137,216 to 1,138,112 _RS07165 SGL_RS07170: SGL_RS07170 - glycine cleavage system protein GcvH, at 1,138,210 to 1,138,608 _RS07170 SGL_RS07175: SGL_RS07175 - NFACT family protein, at 1,138,702 to 1,140,474 _RS07175 SGL_RS07180: SGL_RS07180 - carboxynorspermidine decarboxylase, at 1,140,497 to 1,141,645 _RS07180 Position (kb) 1138 1139 1140 1141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1138.309 kb on + strand, within SGL_RS07170at 1138.385 kb on - strand, within SGL_RS07170at 1138.414 kb on + strand, within SGL_RS07170at 1138.578 kb on + strandat 1138.589 kb on + strandat 1138.623 kb on + strandat 1138.623 kb on + strandat 1138.723 kb on + strandat 1138.746 kb on + strandat 1138.804 kb on + strandat 1138.877 kb on + strandat 1138.947 kb on + strand, within SGL_RS07175at 1138.947 kb on + strand, within SGL_RS07175at 1138.955 kb on - strand, within SGL_RS07175at 1139.046 kb on - strand, within SGL_RS07175at 1139.138 kb on - strand, within SGL_RS07175at 1139.192 kb on - strand, within SGL_RS07175at 1139.317 kb on - strand, within SGL_RS07175at 1139.477 kb on - strand, within SGL_RS07175at 1139.508 kb on + strand, within SGL_RS07175at 1139.689 kb on - strand, within SGL_RS07175at 1139.735 kb on - strand, within SGL_RS07175at 1139.767 kb on + strand, within SGL_RS07175at 1139.775 kb on - strand, within SGL_RS07175at 1139.937 kb on - strand, within SGL_RS07175at 1140.095 kb on + strand, within SGL_RS07175at 1140.113 kb on + strand, within SGL_RS07175at 1140.121 kb on - strand, within SGL_RS07175at 1140.233 kb on + strand, within SGL_RS07175at 1140.241 kb on - strand, within SGL_RS07175at 1140.343 kb on - strandat 1140.372 kb on - strandat 1140.392 kb on - strandat 1140.460 kb on - strandat 1140.594 kb on + strandat 1140.594 kb on + strandat 1140.688 kb on - strand, within SGL_RS07180at 1140.997 kb on - strand, within SGL_RS07180at 1141.026 kb on + strand, within SGL_RS07180at 1141.145 kb on - strand, within SGL_RS07180at 1141.325 kb on - strand, within SGL_RS07180at 1141.457 kb on + strand, within SGL_RS07180

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,138,309 + SGL_RS07170 0.25 -4.7
1,138,385 - SGL_RS07170 0.44 -1.2
1,138,414 + SGL_RS07170 0.51 -2.0
1,138,578 + +1.4
1,138,589 + +1.0
1,138,623 + +0.6
1,138,623 + -0.1
1,138,723 + +1.6
1,138,746 + +1.7
1,138,804 + -0.2
1,138,877 + +1.5
1,138,947 + SGL_RS07175 0.14 +1.4
1,138,947 + SGL_RS07175 0.14 +1.1
1,138,955 - SGL_RS07175 0.14 +1.5
1,139,046 - SGL_RS07175 0.19 +1.7
1,139,138 - SGL_RS07175 0.25 +1.8
1,139,192 - SGL_RS07175 0.28 +1.7
1,139,317 - SGL_RS07175 0.35 +1.5
1,139,477 - SGL_RS07175 0.44 +1.5
1,139,508 + SGL_RS07175 0.45 +1.1
1,139,689 - SGL_RS07175 0.56 +1.6
1,139,735 - SGL_RS07175 0.58 +1.6
1,139,767 + SGL_RS07175 0.60 +0.2
1,139,775 - SGL_RS07175 0.61 +1.5
1,139,937 - SGL_RS07175 0.70 +1.2
1,140,095 + SGL_RS07175 0.79 +2.2
1,140,113 + SGL_RS07175 0.80 +3.5
1,140,121 - SGL_RS07175 0.80 +2.2
1,140,233 + SGL_RS07175 0.86 +1.1
1,140,241 - SGL_RS07175 0.87 +1.5
1,140,343 - +1.3
1,140,372 - +1.6
1,140,392 - +0.9
1,140,460 - -0.1
1,140,594 + -0.2
1,140,594 + -2.4
1,140,688 - SGL_RS07180 0.17 -0.8
1,140,997 - SGL_RS07180 0.44 -0.2
1,141,026 + SGL_RS07180 0.46 -2.3
1,141,145 - SGL_RS07180 0.56 -2.0
1,141,325 - SGL_RS07180 0.72 -0.5
1,141,457 + SGL_RS07180 0.84 +0.8

Or see this region's nucleotide sequence