Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07160 and SGL_RS07165 are separated by 48 nucleotides SGL_RS07165 and SGL_RS07170 are separated by 97 nucleotides SGL_RS07170 and SGL_RS07175 are separated by 93 nucleotides
SGL_RS07160: SGL_RS07160 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,135,716 to 1,137,167
_RS07160
SGL_RS07165: SGL_RS07165 - M23 family metallopeptidase, at 1,137,216 to 1,138,112
_RS07165
SGL_RS07170: SGL_RS07170 - glycine cleavage system protein GcvH, at 1,138,210 to 1,138,608
_RS07170
SGL_RS07175: SGL_RS07175 - NFACT family protein, at 1,138,702 to 1,140,474
_RS07175
Position (kb)
1137
1138
1139 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1137.347 kb on + strand, within SGL_RS07165 at 1137.347 kb on + strand, within SGL_RS07165 at 1137.447 kb on + strand, within SGL_RS07165 at 1137.485 kb on + strand, within SGL_RS07165 at 1138.309 kb on + strand, within SGL_RS07170 at 1138.385 kb on - strand, within SGL_RS07170 at 1138.414 kb on + strand, within SGL_RS07170 at 1138.578 kb on + strand at 1138.589 kb on + strand at 1138.623 kb on + strand at 1138.623 kb on + strand at 1138.723 kb on + strand at 1138.746 kb on + strand at 1138.804 kb on + strand at 1138.877 kb on + strand at 1138.947 kb on + strand, within SGL_RS07175 at 1138.947 kb on + strand, within SGL_RS07175 at 1138.955 kb on - strand, within SGL_RS07175 at 1139.046 kb on - strand, within SGL_RS07175
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,137,347 + SGL_RS07165 0.15 -1.6 1,137,347 + SGL_RS07165 0.15 -1.0 1,137,447 + SGL_RS07165 0.26 -0.2 1,137,485 + SGL_RS07165 0.30 -1.3 1,138,309 + SGL_RS07170 0.25 -4.7 1,138,385 - SGL_RS07170 0.44 -1.2 1,138,414 + SGL_RS07170 0.51 -2.0 1,138,578 + +1.4 1,138,589 + +1.0 1,138,623 + +0.6 1,138,623 + -0.1 1,138,723 + +1.6 1,138,746 + +1.7 1,138,804 + -0.2 1,138,877 + +1.5 1,138,947 + SGL_RS07175 0.14 +1.4 1,138,947 + SGL_RS07175 0.14 +1.1 1,138,955 - SGL_RS07175 0.14 +1.5 1,139,046 - SGL_RS07175 0.19 +1.7
Or see this region's nucleotide sequence