Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06640

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06635 and SGL_RS06640 are separated by 156 nucleotidesSGL_RS06640 and SGL_RS06645 are separated by 28 nucleotidesSGL_RS06645 and SGL_RS06650 are separated by 224 nucleotides SGL_RS06635: SGL_RS06635 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 1,017,600 to 1,018,493 _RS06635 SGL_RS06640: SGL_RS06640 - DUF4168 domain-containing protein, at 1,018,650 to 1,019,126 _RS06640 SGL_RS06645: SGL_RS06645 - urease accessory protein UreE, at 1,019,155 to 1,019,583 _RS06645 SGL_RS06650: SGL_RS06650 - PRC-barrel domain-containing protein, at 1,019,808 to 1,020,761 _RS06650 Position (kb) 1018 1019 1020Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1018.165 kb on + strand, within SGL_RS06635at 1018.315 kb on - strand, within SGL_RS06635at 1018.326 kb on - strand, within SGL_RS06635at 1018.460 kb on - strandat 1018.463 kb on + strandat 1018.503 kb on + strandat 1018.555 kb on - strandat 1018.653 kb on - strandat 1018.848 kb on + strand, within SGL_RS06640at 1018.915 kb on + strand, within SGL_RS06640at 1018.955 kb on - strand, within SGL_RS06640at 1019.332 kb on + strand, within SGL_RS06645at 1019.372 kb on - strand, within SGL_RS06645at 1019.520 kb on + strand, within SGL_RS06645at 1019.528 kb on - strand, within SGL_RS06645

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,018,165 + SGL_RS06635 0.63 -0.4
1,018,315 - SGL_RS06635 0.80 -1.1
1,018,326 - SGL_RS06635 0.81 -1.5
1,018,460 - +1.1
1,018,463 + -1.3
1,018,503 + +0.0
1,018,555 - +0.8
1,018,653 - +5.1
1,018,848 + SGL_RS06640 0.42 +5.7
1,018,915 + SGL_RS06640 0.56 +3.3
1,018,955 - SGL_RS06640 0.64 +4.2
1,019,332 + SGL_RS06645 0.41 +0.2
1,019,372 - SGL_RS06645 0.51 +0.1
1,019,520 + SGL_RS06645 0.85 -0.4
1,019,528 - SGL_RS06645 0.87 -0.3

Or see this region's nucleotide sequence