Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06595

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06585 and SGL_RS06590 are separated by 74 nucleotidesSGL_RS06590 and SGL_RS06595 are separated by 85 nucleotidesSGL_RS06595 and SGL_RS06600 are separated by 135 nucleotides SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246 _RS06585 SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148 _RS06590 SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574 _RS06595 SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759 _RS06600 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1008.438 kb on + strand, within SGL_RS06590at 1008.438 kb on + strand, within SGL_RS06590at 1008.647 kb on - strand, within SGL_RS06590at 1008.724 kb on - strand, within SGL_RS06590at 1008.756 kb on + strand, within SGL_RS06590at 1008.842 kb on + strand, within SGL_RS06590at 1008.866 kb on + strand, within SGL_RS06590at 1008.886 kb on - strand, within SGL_RS06590at 1008.991 kb on + strand, within SGL_RS06590at 1008.999 kb on - strand, within SGL_RS06590at 1009.002 kb on + strand, within SGL_RS06590at 1009.200 kb on - strandat 1009.272 kb on - strandat 1009.272 kb on - strandat 1009.395 kb on - strand, within SGL_RS06595at 1009.395 kb on - strand, within SGL_RS06595at 1009.724 kb on + strand, within SGL_RS06595at 1009.852 kb on - strand, within SGL_RS06595at 1010.014 kb on - strand, within SGL_RS06595at 1010.060 kb on - strand, within SGL_RS06595at 1010.201 kb on - strand, within SGL_RS06595at 1010.205 kb on + strand, within SGL_RS06595at 1010.241 kb on - strand, within SGL_RS06595at 1010.449 kb on + strandat 1010.583 kb on - strandat 1010.853 kb on - strand, within SGL_RS06600at 1010.895 kb on - strand, within SGL_RS06600at 1010.924 kb on - strand, within SGL_RS06600at 1011.007 kb on + strand, within SGL_RS06600at 1011.031 kb on + strand, within SGL_RS06600at 1011.098 kb on - strand, within SGL_RS06600at 1011.186 kb on + strand, within SGL_RS06600at 1011.214 kb on + strand, within SGL_RS06600at 1011.241 kb on + strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.477 kb on - strand, within SGL_RS06600at 1011.514 kb on - strand, within SGL_RS06600

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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1,008,438 + SGL_RS06590 0.14 +1.5
1,008,438 + SGL_RS06590 0.14 +0.0
1,008,647 - SGL_RS06590 0.39 -0.0
1,008,724 - SGL_RS06590 0.49 +0.5
1,008,756 + SGL_RS06590 0.53 +1.0
1,008,842 + SGL_RS06590 0.63 +0.7
1,008,866 + SGL_RS06590 0.66 +1.7
1,008,886 - SGL_RS06590 0.68 +1.7
1,008,991 + SGL_RS06590 0.81 -0.5
1,008,999 - SGL_RS06590 0.82 +2.5
1,009,002 + SGL_RS06590 0.82 +1.6
1,009,200 - -0.2
1,009,272 - +1.8
1,009,272 - +0.3
1,009,395 - SGL_RS06595 0.12 +0.5
1,009,395 - SGL_RS06595 0.12 +1.0
1,009,724 + SGL_RS06595 0.37 +3.0
1,009,852 - SGL_RS06595 0.46 +0.2
1,010,014 - SGL_RS06595 0.58 +0.8
1,010,060 - SGL_RS06595 0.62 +1.8
1,010,201 - SGL_RS06595 0.72 +1.1
1,010,205 + SGL_RS06595 0.72 +2.6
1,010,241 - SGL_RS06595 0.75 +1.6
1,010,449 + +0.8
1,010,583 - +2.0
1,010,853 - SGL_RS06600 0.14 -1.7
1,010,895 - SGL_RS06600 0.18 +0.1
1,010,924 - SGL_RS06600 0.20 +0.2
1,011,007 + SGL_RS06600 0.28 -1.8
1,011,031 + SGL_RS06600 0.31 +0.2
1,011,098 - SGL_RS06600 0.37 +0.0
1,011,186 + SGL_RS06600 0.45 +1.6
1,011,214 + SGL_RS06600 0.48 +0.1
1,011,241 + SGL_RS06600 0.51 -0.6
1,011,477 - SGL_RS06600 0.73 +0.4
1,011,477 - SGL_RS06600 0.73 -0.7
1,011,514 - SGL_RS06600 0.77 -0.1

Or see this region's nucleotide sequence