Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06585 and SGL_RS06590 are separated by 74 nucleotides SGL_RS06590 and SGL_RS06595 are separated by 85 nucleotides SGL_RS06595 and SGL_RS06600 are separated by 135 nucleotides
SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246
_RS06585
SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148
_RS06590
SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574
_RS06595
SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759
_RS06600
Position (kb)
1009
1010
1011 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1008.438 kb on + strand, within SGL_RS06590 at 1008.438 kb on + strand, within SGL_RS06590 at 1008.647 kb on - strand, within SGL_RS06590 at 1008.724 kb on - strand, within SGL_RS06590 at 1008.756 kb on + strand, within SGL_RS06590 at 1008.842 kb on + strand, within SGL_RS06590 at 1008.866 kb on + strand, within SGL_RS06590 at 1008.886 kb on - strand, within SGL_RS06590 at 1008.991 kb on + strand, within SGL_RS06590 at 1008.999 kb on - strand, within SGL_RS06590 at 1009.002 kb on + strand, within SGL_RS06590 at 1009.200 kb on - strand at 1009.272 kb on - strand at 1009.272 kb on - strand at 1009.395 kb on - strand, within SGL_RS06595 at 1009.395 kb on - strand, within SGL_RS06595 at 1009.724 kb on + strand, within SGL_RS06595 at 1009.852 kb on - strand, within SGL_RS06595 at 1010.014 kb on - strand, within SGL_RS06595 at 1010.060 kb on - strand, within SGL_RS06595 at 1010.201 kb on - strand, within SGL_RS06595 at 1010.205 kb on + strand, within SGL_RS06595 at 1010.241 kb on - strand, within SGL_RS06595 at 1010.449 kb on + strand at 1010.583 kb on - strand at 1010.853 kb on - strand, within SGL_RS06600 at 1010.895 kb on - strand, within SGL_RS06600 at 1010.924 kb on - strand, within SGL_RS06600 at 1011.007 kb on + strand, within SGL_RS06600 at 1011.031 kb on + strand, within SGL_RS06600 at 1011.098 kb on - strand, within SGL_RS06600 at 1011.186 kb on + strand, within SGL_RS06600 at 1011.214 kb on + strand, within SGL_RS06600 at 1011.241 kb on + strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.514 kb on - strand, within SGL_RS06600
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 1,008,438 + SGL_RS06590 0.14 +1.5 1,008,438 + SGL_RS06590 0.14 +0.0 1,008,647 - SGL_RS06590 0.39 -0.0 1,008,724 - SGL_RS06590 0.49 +0.5 1,008,756 + SGL_RS06590 0.53 +1.0 1,008,842 + SGL_RS06590 0.63 +0.7 1,008,866 + SGL_RS06590 0.66 +1.7 1,008,886 - SGL_RS06590 0.68 +1.7 1,008,991 + SGL_RS06590 0.81 -0.5 1,008,999 - SGL_RS06590 0.82 +2.5 1,009,002 + SGL_RS06590 0.82 +1.6 1,009,200 - -0.2 1,009,272 - +1.8 1,009,272 - +0.3 1,009,395 - SGL_RS06595 0.12 +0.5 1,009,395 - SGL_RS06595 0.12 +1.0 1,009,724 + SGL_RS06595 0.37 +3.0 1,009,852 - SGL_RS06595 0.46 +0.2 1,010,014 - SGL_RS06595 0.58 +0.8 1,010,060 - SGL_RS06595 0.62 +1.8 1,010,201 - SGL_RS06595 0.72 +1.1 1,010,205 + SGL_RS06595 0.72 +2.6 1,010,241 - SGL_RS06595 0.75 +1.6 1,010,449 + +0.8 1,010,583 - +2.0 1,010,853 - SGL_RS06600 0.14 -1.7 1,010,895 - SGL_RS06600 0.18 +0.1 1,010,924 - SGL_RS06600 0.20 +0.2 1,011,007 + SGL_RS06600 0.28 -1.8 1,011,031 + SGL_RS06600 0.31 +0.2 1,011,098 - SGL_RS06600 0.37 +0.0 1,011,186 + SGL_RS06600 0.45 +1.6 1,011,214 + SGL_RS06600 0.48 +0.1 1,011,241 + SGL_RS06600 0.51 -0.6 1,011,477 - SGL_RS06600 0.73 +0.4 1,011,477 - SGL_RS06600 0.73 -0.7 1,011,514 - SGL_RS06600 0.77 -0.1
Or see this region's nucleotide sequence