Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06485

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06480 and SGL_RS06485 are separated by 182 nucleotidesSGL_RS06485 and SGL_RS06490 are separated by 23 nucleotides SGL_RS06480: SGL_RS06480 - sigma-70 family RNA polymerase sigma factor, at 983,804 to 984,475 _RS06480 SGL_RS06485: SGL_RS06485 - anti-sigma factor, at 984,658 to 985,200 _RS06485 SGL_RS06490: SGL_RS06490 - permease, at 985,224 to 986,222 _RS06490 Position (kb) 984 985 986Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 983.701 kb on + strandat 984.165 kb on + strand, within SGL_RS06480at 984.365 kb on - strand, within SGL_RS06480at 984.430 kb on - strandat 984.552 kb on + strandat 984.588 kb on + strandat 985.000 kb on + strand, within SGL_RS06485at 985.387 kb on + strand, within SGL_RS06490at 985.573 kb on + strand, within SGL_RS06490at 985.750 kb on + strand, within SGL_RS06490at 986.033 kb on - strand, within SGL_RS06490at 986.110 kb on + strand, within SGL_RS06490

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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983,701 + +0.3
984,165 + SGL_RS06480 0.54 -2.5
984,365 - SGL_RS06480 0.83 -2.2
984,430 - -2.2
984,552 + +0.2
984,588 + +1.8
985,000 + SGL_RS06485 0.63 -3.6
985,387 + SGL_RS06490 0.16 -0.6
985,573 + SGL_RS06490 0.35 -0.8
985,750 + SGL_RS06490 0.53 -2.0
986,033 - SGL_RS06490 0.81 -1.1
986,110 + SGL_RS06490 0.89 -0.4

Or see this region's nucleotide sequence