Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06460 and SGL_RS06465 are separated by 3 nucleotides SGL_RS06465 and SGL_RS06470 are separated by 47 nucleotides SGL_RS06470 and SGL_RS06475 are separated by 108 nucleotides SGL_RS06475 and SGL_RS06480 are separated by 263 nucleotides
SGL_RS06460: SGL_RS06460 - fatty acid desaturase, at 981,691 to 982,629
_RS06460
SGL_RS06465: SGL_RS06465 - hypothetical protein, at 982,633 to 982,920
_RS06465
SGL_RS06470: SGL_RS06470 - chlorophyll a/b-binding protein, at 982,968 to 983,180
_RS06470
SGL_RS06475: SGL_RS06475 - hypothetical protein, at 983,289 to 983,540
_RS06475
SGL_RS06480: SGL_RS06480 - sigma-70 family RNA polymerase sigma factor, at 983,804 to 984,475
_RS06480
Position (kb) 983
984 Strain fitness (log2 ratio) -2
-1
0
1 at 982.453 kb on - strand, within SGL_RS06460 at 982.495 kb on + strand, within SGL_RS06460 at 982.626 kb on - strand at 982.990 kb on - strand, within SGL_RS06470 at 982.997 kb on + strand, within SGL_RS06470 at 983.034 kb on + strand, within SGL_RS06470 at 983.147 kb on + strand, within SGL_RS06470 at 983.211 kb on + strand at 983.219 kb on - strand at 983.219 kb on - strand at 983.335 kb on + strand, within SGL_RS06475 at 983.337 kb on + strand, within SGL_RS06475 at 983.390 kb on - strand, within SGL_RS06475 at 983.441 kb on + strand, within SGL_RS06475 at 983.474 kb on - strand, within SGL_RS06475 at 983.603 kb on + strand at 983.611 kb on - strand at 983.701 kb on + strand at 984.165 kb on + strand, within SGL_RS06480 at 984.365 kb on - strand, within SGL_RS06480 at 984.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 982,453 - SGL_RS06460 0.81 -0.6 982,495 + SGL_RS06460 0.86 -0.3 982,626 - +1.3 982,990 - SGL_RS06470 0.10 +0.8 982,997 + SGL_RS06470 0.14 -0.1 983,034 + SGL_RS06470 0.31 -0.4 983,147 + SGL_RS06470 0.84 +0.4 983,211 + +0.2 983,219 - -0.6 983,219 - -0.0 983,335 + SGL_RS06475 0.18 +0.5 983,337 + SGL_RS06475 0.19 +0.3 983,390 - SGL_RS06475 0.40 +0.3 983,441 + SGL_RS06475 0.60 +1.3 983,474 - SGL_RS06475 0.73 +0.6 983,603 + +0.1 983,611 - -0.2 983,701 + +0.3 984,165 + SGL_RS06480 0.54 -2.5 984,365 - SGL_RS06480 0.83 -2.2 984,430 - -2.2
Or see this region's nucleotide sequence