Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06345 and SGL_RS06350 are separated by 377 nucleotides SGL_RS06350 and SGL_RS06355 are separated by 158 nucleotides SGL_RS06355 and SGL_RS06360 are separated by 59 nucleotides
SGL_RS06345: SGL_RS06345 - alpha-ketoacid dehydrogenase subunit beta, at 954,453 to 955,427
_RS06345
SGL_RS06350: SGL_RS06350 - BMC domain-containing protein, at 955,805 to 956,116
_RS06350
SGL_RS06355: SGL_RS06355 - carbon dioxide-concentrating mechanism protein CcmK, at 956,275 to 956,613
_RS06355
SGL_RS06360: SGL_RS06360 - glycerate kinase, at 956,673 to 957,788
_RS06360
Position (kb) 956
957 Strain fitness (log2 ratio) -1
0
1
2 at 955.749 kb on - strand at 955.841 kb on - strand, within SGL_RS06350 at 956.014 kb on - strand, within SGL_RS06350 at 956.146 kb on + strand at 956.161 kb on - strand at 956.266 kb on - strand at 956.349 kb on + strand, within SGL_RS06355 at 956.349 kb on + strand, within SGL_RS06355 at 956.408 kb on + strand, within SGL_RS06355 at 956.493 kb on + strand, within SGL_RS06355 at 956.637 kb on + strand at 956.778 kb on + strand at 956.817 kb on - strand, within SGL_RS06360 at 956.867 kb on - strand, within SGL_RS06360 at 956.926 kb on - strand, within SGL_RS06360 at 957.093 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.273 kb on + strand, within SGL_RS06360 at 957.395 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.497 kb on + strand, within SGL_RS06360 at 957.560 kb on + strand, within SGL_RS06360
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 955,749 - +0.5 955,841 - SGL_RS06350 0.12 +0.8 956,014 - SGL_RS06350 0.67 +0.6 956,146 + -0.2 956,161 - -0.1 956,266 - +2.0 956,349 + SGL_RS06355 0.22 +1.7 956,349 + SGL_RS06355 0.22 +1.5 956,408 + SGL_RS06355 0.39 +0.6 956,493 + SGL_RS06355 0.64 +1.2 956,637 + +0.2 956,778 + -0.0 956,817 - SGL_RS06360 0.13 -1.0 956,867 - SGL_RS06360 0.17 -0.2 956,926 - SGL_RS06360 0.23 +0.5 957,093 + SGL_RS06360 0.38 -0.4 957,273 + SGL_RS06360 0.54 -0.2 957,273 + SGL_RS06360 0.54 -0.0 957,395 + SGL_RS06360 0.65 -0.1 957,497 + SGL_RS06360 0.74 -0.3 957,497 + SGL_RS06360 0.74 -0.1 957,560 + SGL_RS06360 0.79 +0.1
Or see this region's nucleotide sequence