Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06115 and SGL_RS06120 are separated by 163 nucleotides SGL_RS06120 and SGL_RS06125 are separated by 39 nucleotides SGL_RS06125 and SGL_RS06130 are separated by 6 nucleotides SGL_RS06130 and SGL_RS06135 are separated by 119 nucleotides
SGL_RS06115: SGL_RS06115 - DUF1868 domain-containing protein, at 907,050 to 907,826
_RS06115
SGL_RS06120: SGL_RS06120 - hypothetical protein, at 907,990 to 908,313
_RS06120
SGL_RS06125: SGL_RS06125 - triacylglycerol lipase, at 908,353 to 908,961
_RS06125
SGL_RS06130: SGL_RS06130 - anti-sigma regulatory factor, at 908,968 to 909,483
_RS06130
SGL_RS06135: SGL_RS06135 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 909,603 to 910,994
_RS06135
Position (kb) 908
909 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 907.353 kb on - strand, within SGL_RS06115 at 907.359 kb on - strand, within SGL_RS06115 at 907.364 kb on - strand, within SGL_RS06115 at 907.431 kb on + strand, within SGL_RS06115 at 907.464 kb on - strand, within SGL_RS06115 at 907.482 kb on + strand, within SGL_RS06115 at 907.557 kb on - strand, within SGL_RS06115 at 907.618 kb on - strand, within SGL_RS06115 at 907.629 kb on + strand, within SGL_RS06115 at 907.630 kb on + strand, within SGL_RS06115 at 907.745 kb on + strand, within SGL_RS06115 at 907.751 kb on - strand at 908.092 kb on - strand, within SGL_RS06120 at 908.135 kb on + strand, within SGL_RS06120 at 908.388 kb on + strand at 908.433 kb on - strand, within SGL_RS06125 at 908.527 kb on - strand, within SGL_RS06125 at 908.578 kb on + strand, within SGL_RS06125 at 908.606 kb on - strand, within SGL_RS06125 at 908.616 kb on - strand, within SGL_RS06125 at 908.629 kb on - strand, within SGL_RS06125 at 908.824 kb on + strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.850 kb on - strand, within SGL_RS06125 at 908.860 kb on - strand, within SGL_RS06125 at 908.928 kb on - strand at 909.200 kb on - strand, within SGL_RS06130 at 909.221 kb on + strand, within SGL_RS06130 at 909.226 kb on + strand, within SGL_RS06130 at 909.348 kb on - strand, within SGL_RS06130 at 909.354 kb on - strand, within SGL_RS06130 at 909.372 kb on - strand, within SGL_RS06130 at 909.495 kb on - strand at 909.519 kb on - strand at 909.579 kb on + strand at 909.606 kb on + strand at 909.669 kb on + strand at 909.733 kb on - strand at 909.797 kb on + strand, within SGL_RS06135 at 909.813 kb on - strand, within SGL_RS06135 at 909.831 kb on - strand, within SGL_RS06135 at 909.932 kb on + strand, within SGL_RS06135 at 909.934 kb on + strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 907,353 - SGL_RS06115 0.39 +1.2 907,359 - SGL_RS06115 0.40 +1.2 907,364 - SGL_RS06115 0.40 +0.7 907,431 + SGL_RS06115 0.49 +0.7 907,464 - SGL_RS06115 0.53 +1.9 907,482 + SGL_RS06115 0.56 +2.0 907,557 - SGL_RS06115 0.65 +1.3 907,618 - SGL_RS06115 0.73 +1.3 907,629 + SGL_RS06115 0.75 +0.5 907,630 + SGL_RS06115 0.75 +1.5 907,745 + SGL_RS06115 0.89 +0.9 907,751 - +1.1 908,092 - SGL_RS06120 0.31 +0.2 908,135 + SGL_RS06120 0.45 +0.4 908,388 + -1.0 908,433 - SGL_RS06125 0.13 -0.2 908,527 - SGL_RS06125 0.29 -0.3 908,578 + SGL_RS06125 0.37 +0.4 908,606 - SGL_RS06125 0.42 -0.2 908,616 - SGL_RS06125 0.43 -0.6 908,629 - SGL_RS06125 0.45 +0.2 908,824 + SGL_RS06125 0.77 -0.6 908,843 - SGL_RS06125 0.80 -0.1 908,843 - SGL_RS06125 0.80 +0.3 908,850 - SGL_RS06125 0.82 +0.0 908,860 - SGL_RS06125 0.83 +0.1 908,928 - -0.3 909,200 - SGL_RS06130 0.45 -4.4 909,221 + SGL_RS06130 0.49 -4.8 909,226 + SGL_RS06130 0.50 -2.9 909,348 - SGL_RS06130 0.74 -3.5 909,354 - SGL_RS06130 0.75 -3.0 909,372 - SGL_RS06130 0.78 -3.7 909,495 - -2.0 909,519 - -4.8 909,579 + -0.8 909,606 + +0.1 909,669 + -0.2 909,733 - +0.5 909,797 + SGL_RS06135 0.14 +0.1 909,813 - SGL_RS06135 0.15 +0.7 909,831 - SGL_RS06135 0.16 -0.1 909,932 + SGL_RS06135 0.24 +1.0 909,934 + SGL_RS06135 0.24 +0.2 909,940 - SGL_RS06135 0.24 +0.2 909,940 - SGL_RS06135 0.24 +0.4
Or see this region's nucleotide sequence