Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06110 and SGL_RS06115 are separated by 287 nucleotides SGL_RS06115 and SGL_RS06120 are separated by 163 nucleotides SGL_RS06120 and SGL_RS06125 are separated by 39 nucleotides
SGL_RS06110: SGL_RS06110 - glycosyltransferase family 4 protein, at 905,575 to 906,762
_RS06110
SGL_RS06115: SGL_RS06115 - DUF1868 domain-containing protein, at 907,050 to 907,826
_RS06115
SGL_RS06120: SGL_RS06120 - hypothetical protein, at 907,990 to 908,313
_RS06120
SGL_RS06125: SGL_RS06125 - triacylglycerol lipase, at 908,353 to 908,961
_RS06125
Position (kb) 907
908 Strain fitness (log2 ratio) -1
0
1
2 at 906.346 kb on + strand, within SGL_RS06110 at 906.379 kb on + strand, within SGL_RS06110 at 906.379 kb on + strand, within SGL_RS06110 at 906.463 kb on + strand, within SGL_RS06110 at 906.482 kb on - strand, within SGL_RS06110 at 906.696 kb on - strand at 906.712 kb on + strand at 906.832 kb on - strand at 907.009 kb on - strand at 907.041 kb on - strand at 907.052 kb on + strand at 907.068 kb on + strand at 907.113 kb on - strand at 907.264 kb on - strand, within SGL_RS06115 at 907.319 kb on + strand, within SGL_RS06115 at 907.345 kb on + strand, within SGL_RS06115 at 907.345 kb on + strand, within SGL_RS06115 at 907.353 kb on - strand, within SGL_RS06115 at 907.359 kb on - strand, within SGL_RS06115 at 907.364 kb on - strand, within SGL_RS06115 at 907.431 kb on + strand, within SGL_RS06115 at 907.464 kb on - strand, within SGL_RS06115 at 907.482 kb on + strand, within SGL_RS06115 at 907.557 kb on - strand, within SGL_RS06115 at 907.618 kb on - strand, within SGL_RS06115 at 907.629 kb on + strand, within SGL_RS06115 at 907.630 kb on + strand, within SGL_RS06115 at 907.745 kb on + strand, within SGL_RS06115 at 907.751 kb on - strand at 908.092 kb on - strand, within SGL_RS06120 at 908.135 kb on + strand, within SGL_RS06120 at 908.388 kb on + strand at 908.433 kb on - strand, within SGL_RS06125 at 908.527 kb on - strand, within SGL_RS06125 at 908.578 kb on + strand, within SGL_RS06125 at 908.606 kb on - strand, within SGL_RS06125 at 908.616 kb on - strand, within SGL_RS06125 at 908.629 kb on - strand, within SGL_RS06125 at 908.824 kb on + strand, within SGL_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 906,346 + SGL_RS06110 0.65 +1.4 906,379 + SGL_RS06110 0.68 +1.4 906,379 + SGL_RS06110 0.68 +1.0 906,463 + SGL_RS06110 0.75 +1.9 906,482 - SGL_RS06110 0.76 +0.8 906,696 - +0.3 906,712 + +2.1 906,832 - -0.2 907,009 - +0.0 907,041 - +1.0 907,052 + +1.8 907,068 + +0.6 907,113 - +0.7 907,264 - SGL_RS06115 0.28 +1.1 907,319 + SGL_RS06115 0.35 +1.6 907,345 + SGL_RS06115 0.38 +1.2 907,345 + SGL_RS06115 0.38 +1.2 907,353 - SGL_RS06115 0.39 +1.2 907,359 - SGL_RS06115 0.40 +1.2 907,364 - SGL_RS06115 0.40 +0.7 907,431 + SGL_RS06115 0.49 +0.7 907,464 - SGL_RS06115 0.53 +1.9 907,482 + SGL_RS06115 0.56 +2.0 907,557 - SGL_RS06115 0.65 +1.3 907,618 - SGL_RS06115 0.73 +1.3 907,629 + SGL_RS06115 0.75 +0.5 907,630 + SGL_RS06115 0.75 +1.5 907,745 + SGL_RS06115 0.89 +0.9 907,751 - +1.1 908,092 - SGL_RS06120 0.31 +0.2 908,135 + SGL_RS06120 0.45 +0.4 908,388 + -1.0 908,433 - SGL_RS06125 0.13 -0.2 908,527 - SGL_RS06125 0.29 -0.3 908,578 + SGL_RS06125 0.37 +0.4 908,606 - SGL_RS06125 0.42 -0.2 908,616 - SGL_RS06125 0.43 -0.6 908,629 - SGL_RS06125 0.45 +0.2 908,824 + SGL_RS06125 0.77 -0.6
Or see this region's nucleotide sequence