Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06080 and SGL_RS06085 are separated by 534 nucleotides SGL_RS06085 and SGL_RS06090 are separated by 71 nucleotides SGL_RS06090 and SGL_RS06095 are separated by 92 nucleotides
SGL_RS06080: SGL_RS06080 - response regulator transcription factor, at 899,937 to 900,662
_RS06080
SGL_RS06085: SGL_RS06085 - response regulator, at 901,197 to 902,315
_RS06085
SGL_RS06090: SGL_RS06090 - hypothetical protein, at 902,387 to 903,055
_RS06090
SGL_RS06095: SGL_RS06095 - type II 3-dehydroquinate dehydratase, at 903,148 to 903,606
_RS06095
Position (kb) 901
902
903 Strain fitness (log2 ratio) -1
0
1 at 900.236 kb on - strand, within SGL_RS06080 at 900.447 kb on + strand, within SGL_RS06080 at 900.745 kb on - strand at 900.771 kb on + strand at 900.905 kb on + strand at 900.913 kb on - strand at 900.913 kb on - strand at 901.006 kb on - strand at 901.051 kb on - strand at 901.263 kb on + strand at 901.491 kb on - strand, within SGL_RS06085 at 901.538 kb on + strand, within SGL_RS06085 at 901.699 kb on + strand, within SGL_RS06085 at 902.102 kb on + strand, within SGL_RS06085 at 902.542 kb on + strand, within SGL_RS06090 at 902.618 kb on + strand, within SGL_RS06090 at 902.680 kb on + strand, within SGL_RS06090 at 902.782 kb on - strand, within SGL_RS06090 at 902.789 kb on + strand, within SGL_RS06090 at 902.875 kb on + strand, within SGL_RS06090 at 903.051 kb on + strand at 903.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 900,236 - SGL_RS06080 0.41 -0.6 900,447 + SGL_RS06080 0.70 +0.3 900,745 - -0.2 900,771 + +0.0 900,905 + -0.5 900,913 - -0.1 900,913 - -0.5 901,006 - +0.2 901,051 - -0.2 901,263 + +0.7 901,491 - SGL_RS06085 0.26 +0.7 901,538 + SGL_RS06085 0.30 +0.4 901,699 + SGL_RS06085 0.45 +0.7 902,102 + SGL_RS06085 0.81 +1.6 902,542 + SGL_RS06090 0.23 -0.5 902,618 + SGL_RS06090 0.35 +0.5 902,680 + SGL_RS06090 0.44 -0.9 902,782 - SGL_RS06090 0.59 -0.4 902,789 + SGL_RS06090 0.60 -0.3 902,875 + SGL_RS06090 0.73 -0.0 903,051 + -0.1 903,077 - -0.4
Or see this region's nucleotide sequence