Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06020 and SGL_RS06025 are separated by 109 nucleotides SGL_RS06025 and SGL_RS06030 are separated by 204 nucleotides SGL_RS06030 and SGL_RS06035 are separated by 188 nucleotides SGL_RS06035 and SGL_RS06040 are separated by 186 nucleotides
SGL_RS06020: SGL_RS06020 - sugar ABC transporter permease, at 884,635 to 885,531
_RS06020
SGL_RS06025: SGL_RS06025 - DUF29 domain-containing protein, at 885,641 to 886,078
_RS06025
SGL_RS06030: SGL_RS06030 - HhoA/HhoB/HtrA family serine endopeptidase, at 886,283 to 887,542
_RS06030
SGL_RS06035: SGL_RS06035 - Rieske (2Fe-2S) protein, at 887,731 to 888,084
_RS06035
SGL_RS06040: SGL_RS06040 - DUF1997 domain-containing protein, at 888,271 to 888,993
_RS06040
Position (kb) 886
887
888 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 885.446 kb on - strand at 885.527 kb on + strand at 885.902 kb on - strand, within SGL_RS06025 at 886.264 kb on + strand at 886.280 kb on + strand at 886.891 kb on - strand, within SGL_RS06030 at 887.060 kb on - strand, within SGL_RS06030 at 887.186 kb on - strand, within SGL_RS06030 at 887.213 kb on + strand, within SGL_RS06030 at 887.216 kb on - strand, within SGL_RS06030 at 887.226 kb on - strand, within SGL_RS06030 at 887.298 kb on - strand, within SGL_RS06030 at 887.315 kb on - strand, within SGL_RS06030 at 887.348 kb on - strand, within SGL_RS06030 at 887.360 kb on - strand, within SGL_RS06030 at 887.428 kb on - strand at 887.521 kb on + strand at 887.521 kb on + strand at 887.582 kb on - strand at 887.635 kb on - strand at 887.636 kb on - strand at 887.646 kb on - strand at 887.646 kb on - strand at 887.675 kb on + strand at 887.753 kb on + strand at 887.856 kb on - strand, within SGL_RS06035 at 887.959 kb on + strand, within SGL_RS06035 at 887.964 kb on - strand, within SGL_RS06035 at 887.965 kb on + strand, within SGL_RS06035 at 888.092 kb on + strand at 888.396 kb on + strand, within SGL_RS06040 at 888.400 kb on - strand, within SGL_RS06040 at 888.420 kb on - strand, within SGL_RS06040 at 888.425 kb on + strand, within SGL_RS06040
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 885,446 - -4.1 885,527 + -0.1 885,902 - SGL_RS06025 0.60 -0.0 886,264 + +2.9 886,280 + +2.9 886,891 - SGL_RS06030 0.48 +3.0 887,060 - SGL_RS06030 0.62 +2.9 887,186 - SGL_RS06030 0.72 -1.5 887,213 + SGL_RS06030 0.74 +1.0 887,216 - SGL_RS06030 0.74 +0.4 887,226 - SGL_RS06030 0.75 +0.9 887,298 - SGL_RS06030 0.81 +1.0 887,315 - SGL_RS06030 0.82 +1.4 887,348 - SGL_RS06030 0.85 +0.6 887,360 - SGL_RS06030 0.85 +1.7 887,428 - +1.2 887,521 + +0.1 887,521 + -0.4 887,582 - -0.4 887,635 - +0.6 887,636 - -1.0 887,646 - +0.6 887,646 - +0.4 887,675 + -0.2 887,753 + +0.3 887,856 - SGL_RS06035 0.35 -0.2 887,959 + SGL_RS06035 0.64 +0.2 887,964 - SGL_RS06035 0.66 +0.2 887,965 + SGL_RS06035 0.66 +1.6 888,092 + -0.1 888,396 + SGL_RS06040 0.17 -0.5 888,400 - SGL_RS06040 0.18 -0.4 888,420 - SGL_RS06040 0.21 +0.0 888,425 + SGL_RS06040 0.21 +0.1
Or see this region's nucleotide sequence