Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05945 and SGL_RS05950 overlap by 4 nucleotides SGL_RS05950 and SGL_RS05955 are separated by 163 nucleotides
SGL_RS05945: SGL_RS05945 - PAS domain S-box protein, at 862,262 to 866,377
_RS05945
SGL_RS05950: SGL_RS05950 - hypothetical protein, at 866,374 to 867,093
_RS05950
SGL_RS05955: SGL_RS05955 - ATP-dependent helicase, at 867,257 to 869,569
_RS05955
Position (kb) 866
867
868 Strain fitness (log2 ratio) -1
0
1
2 at 865.476 kb on - strand, within SGL_RS05945 at 865.543 kb on + strand, within SGL_RS05945 at 865.762 kb on - strand, within SGL_RS05945 at 865.805 kb on - strand, within SGL_RS05945 at 865.884 kb on - strand, within SGL_RS05945 at 865.964 kb on - strand, within SGL_RS05945 at 866.088 kb on + strand at 866.096 kb on - strand at 866.099 kb on + strand at 866.234 kb on - strand at 866.234 kb on - strand at 866.234 kb on - strand at 866.284 kb on + strand at 866.294 kb on - strand at 866.399 kb on - strand at 866.411 kb on - strand at 866.536 kb on - strand, within SGL_RS05950 at 866.622 kb on + strand, within SGL_RS05950 at 866.635 kb on + strand, within SGL_RS05950 at 866.635 kb on + strand, within SGL_RS05950 at 866.643 kb on - strand, within SGL_RS05950 at 866.715 kb on - strand, within SGL_RS05950 at 867.005 kb on - strand, within SGL_RS05950 at 867.281 kb on + strand at 867.419 kb on - strand at 867.585 kb on + strand, within SGL_RS05955 at 867.585 kb on + strand, within SGL_RS05955 at 867.655 kb on - strand, within SGL_RS05955 at 867.660 kb on + strand, within SGL_RS05955 at 867.666 kb on + strand, within SGL_RS05955 at 867.743 kb on - strand, within SGL_RS05955 at 867.745 kb on - strand, within SGL_RS05955 at 867.764 kb on + strand, within SGL_RS05955 at 867.802 kb on - strand, within SGL_RS05955 at 867.850 kb on + strand, within SGL_RS05955 at 867.858 kb on - strand, within SGL_RS05955 at 867.944 kb on + strand, within SGL_RS05955 at 867.968 kb on + strand, within SGL_RS05955 at 867.976 kb on - strand, within SGL_RS05955 at 868.078 kb on - strand, within SGL_RS05955
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 865,476 - SGL_RS05945 0.78 -0.2 865,543 + SGL_RS05945 0.80 +0.3 865,762 - SGL_RS05945 0.85 +0.1 865,805 - SGL_RS05945 0.86 +0.5 865,884 - SGL_RS05945 0.88 -0.3 865,964 - SGL_RS05945 0.90 +0.6 866,088 + +0.1 866,096 - +0.1 866,099 + +0.5 866,234 - +0.2 866,234 - -0.3 866,234 - +0.2 866,284 + +0.2 866,294 - -0.0 866,399 - +0.1 866,411 - +1.9 866,536 - SGL_RS05950 0.23 +1.0 866,622 + SGL_RS05950 0.34 +1.3 866,635 + SGL_RS05950 0.36 +1.6 866,635 + SGL_RS05950 0.36 +1.4 866,643 - SGL_RS05950 0.37 +1.1 866,715 - SGL_RS05950 0.47 +2.1 867,005 - SGL_RS05950 0.88 +1.1 867,281 + +0.2 867,419 - +0.1 867,585 + SGL_RS05955 0.14 -0.2 867,585 + SGL_RS05955 0.14 +0.2 867,655 - SGL_RS05955 0.17 -0.0 867,660 + SGL_RS05955 0.17 +1.0 867,666 + SGL_RS05955 0.18 +0.3 867,743 - SGL_RS05955 0.21 +0.3 867,745 - SGL_RS05955 0.21 +0.2 867,764 + SGL_RS05955 0.22 +0.0 867,802 - SGL_RS05955 0.24 -0.4 867,850 + SGL_RS05955 0.26 -0.1 867,858 - SGL_RS05955 0.26 -0.0 867,944 + SGL_RS05955 0.30 -0.7 867,968 + SGL_RS05955 0.31 -0.4 867,976 - SGL_RS05955 0.31 +0.1 868,078 - SGL_RS05955 0.35 -0.2
Or see this region's nucleotide sequence