Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05725

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05710 and SGL_RS05715 are separated by 52 nucleotidesSGL_RS05715 and SGL_RS05720 overlap by 1 nucleotidesSGL_RS05720 and SGL_RS05725 are separated by 64 nucleotidesSGL_RS05725 and SGL_RS05730 are separated by 17 nucleotidesSGL_RS05730 and SGL_RS05735 are separated by 77 nucleotides SGL_RS05710: SGL_RS05710 - 50S ribosomal protein L31, at 826,637 to 826,882 _RS05710 SGL_RS05715: SGL_RS05715 - 30S ribosomal protein S9, at 826,935 to 827,348 _RS05715 SGL_RS05720: SGL_RS05720 - 50S ribosomal protein L13, at 827,348 to 827,803 _RS05720 SGL_RS05725: SGL_RS05725 - tRNA pseudouridine(38-40) synthase TruA, at 827,868 to 828,695 _RS05725 SGL_RS05730: SGL_RS05730 - 50S ribosomal protein L17, at 828,713 to 829,063 _RS05730 SGL_RS05735: SGL_RS05735 - DNA-directed RNA polymerase subunit alpha, at 829,141 to 830,085 _RS05735 Position (kb) 827 828 829Strain fitness (log2 ratio) -2 -1 0 1at 828.130 kb on - strand, within SGL_RS05725at 828.203 kb on - strand, within SGL_RS05725at 828.936 kb on + strand, within SGL_RS05730

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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828,130 - SGL_RS05725 0.32 -2.0
828,203 - SGL_RS05725 0.40 +1.1
828,936 + SGL_RS05730 0.64 -1.2

Or see this region's nucleotide sequence