Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05550 and SGL_RS05555 are separated by 151 nucleotides SGL_RS05555 and SGL_RS05560 are separated by 72 nucleotides SGL_RS05560 and SGL_RS05565 are separated by 31 nucleotides SGL_RS05565 and SGL_RS05570 are separated by 56 nucleotides
SGL_RS05550: SGL_RS05550 - cytochrome c oxidase subunit CtaE, at 793,509 to 794,210
_RS05550
SGL_RS05555: SGL_RS05555 - thioredoxin family protein, at 794,362 to 794,691
_RS05555
SGL_RS05560: SGL_RS05560 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 794,764 to 795,900
_RS05560
SGL_RS05565: SGL_RS05565 - ABC transporter ATP-binding protein, at 795,932 to 796,732
_RS05565
SGL_RS05570: SGL_RS05570 - ABC transporter permease, at 796,789 to 797,631
_RS05570
Position (kb) 794
795
796 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 793.782 kb on + strand, within SGL_RS05550 at 793.849 kb on + strand, within SGL_RS05550 at 793.961 kb on - strand, within SGL_RS05550 at 794.064 kb on + strand, within SGL_RS05550 at 794.072 kb on - strand, within SGL_RS05550 at 794.260 kb on - strand at 794.286 kb on + strand at 794.299 kb on - strand at 794.320 kb on + strand at 794.328 kb on - strand at 794.499 kb on + strand, within SGL_RS05555 at 794.560 kb on + strand, within SGL_RS05555 at 794.572 kb on + strand, within SGL_RS05555 at 794.835 kb on - strand at 794.881 kb on - strand, within SGL_RS05560 at 795.076 kb on - strand, within SGL_RS05560 at 795.235 kb on - strand, within SGL_RS05560 at 795.250 kb on + strand, within SGL_RS05560 at 795.256 kb on + strand, within SGL_RS05560 at 795.276 kb on + strand, within SGL_RS05560 at 795.358 kb on - strand, within SGL_RS05560 at 795.373 kb on - strand, within SGL_RS05560 at 795.402 kb on - strand, within SGL_RS05560 at 795.734 kb on - strand, within SGL_RS05560 at 795.773 kb on - strand, within SGL_RS05560 at 795.826 kb on + strand at 795.961 kb on - strand at 796.147 kb on + strand, within SGL_RS05565 at 796.287 kb on + strand, within SGL_RS05565 at 796.295 kb on - strand, within SGL_RS05565 at 796.429 kb on - strand, within SGL_RS05565 at 796.494 kb on + strand, within SGL_RS05565 at 796.525 kb on + strand, within SGL_RS05565
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 793,782 + SGL_RS05550 0.39 +0.1 793,849 + SGL_RS05550 0.48 -0.2 793,961 - SGL_RS05550 0.64 +0.3 794,064 + SGL_RS05550 0.79 -0.4 794,072 - SGL_RS05550 0.80 +0.3 794,260 - -1.0 794,286 + -0.4 794,299 - -1.2 794,320 + +0.8 794,328 - -0.8 794,499 + SGL_RS05555 0.42 -2.8 794,560 + SGL_RS05555 0.60 +0.8 794,572 + SGL_RS05555 0.64 -3.6 794,835 - -1.8 794,881 - SGL_RS05560 0.10 -2.2 795,076 - SGL_RS05560 0.27 -1.5 795,235 - SGL_RS05560 0.41 -1.5 795,250 + SGL_RS05560 0.43 -3.6 795,256 + SGL_RS05560 0.43 -2.2 795,276 + SGL_RS05560 0.45 -2.8 795,358 - SGL_RS05560 0.52 -2.8 795,373 - SGL_RS05560 0.54 -1.5 795,402 - SGL_RS05560 0.56 -2.2 795,734 - SGL_RS05560 0.85 -3.9 795,773 - SGL_RS05560 0.89 -0.8 795,826 + -3.3 795,961 - +0.2 796,147 + SGL_RS05565 0.27 +0.1 796,287 + SGL_RS05565 0.44 -0.2 796,295 - SGL_RS05565 0.45 +0.1 796,429 - SGL_RS05565 0.62 +0.4 796,494 + SGL_RS05565 0.70 -0.0 796,525 + SGL_RS05565 0.74 -0.7
Or see this region's nucleotide sequence