Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05180

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05175 and SGL_RS05180 are separated by 3 nucleotidesSGL_RS05180 and SGL_RS05185 are separated by 12 nucleotides SGL_RS05175: SGL_RS05175 - 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 710,036 to 710,977 _RS05175 SGL_RS05180: SGL_RS05180 - alpha/beta hydrolase, at 710,981 to 711,595 _RS05180 SGL_RS05185: SGL_RS05185 - SpoIID/LytB domain-containing protein, at 711,608 to 712,768 _RS05185 Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1at 710.318 kb on + strand, within SGL_RS05175at 710.388 kb on + strand, within SGL_RS05175at 710.388 kb on + strand, within SGL_RS05175at 710.452 kb on + strand, within SGL_RS05175at 711.009 kb on + strandat 711.026 kb on + strandat 711.064 kb on + strand, within SGL_RS05180at 711.210 kb on + strand, within SGL_RS05180at 711.234 kb on - strand, within SGL_RS05180at 711.285 kb on - strand, within SGL_RS05180at 711.295 kb on - strand, within SGL_RS05180at 711.383 kb on + strand, within SGL_RS05180at 711.427 kb on - strand, within SGL_RS05180at 711.592 kb on - strandat 711.598 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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710,318 + SGL_RS05175 0.30 +0.4
710,388 + SGL_RS05175 0.37 -0.4
710,388 + SGL_RS05175 0.37 +0.2
710,452 + SGL_RS05175 0.44 -0.2
711,009 + -0.0
711,026 + -0.3
711,064 + SGL_RS05180 0.13 +0.2
711,210 + SGL_RS05180 0.37 -0.4
711,234 - SGL_RS05180 0.41 -0.3
711,285 - SGL_RS05180 0.49 -0.3
711,295 - SGL_RS05180 0.51 +0.1
711,383 + SGL_RS05180 0.65 -0.3
711,427 - SGL_RS05180 0.73 +0.7
711,592 - -0.1
711,598 - +0.1

Or see this region's nucleotide sequence