Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04815 and SGL_RS04820 are separated by 50 nucleotides SGL_RS04820 and SGL_RS04825 are separated by 303 nucleotides SGL_RS04825 and SGL_RS04830 are separated by 119 nucleotides
SGL_RS04815: SGL_RS04815 - hypothetical protein, at 629,398 to 630,504
_RS04815
SGL_RS04820: SGL_RS04820 - LysR family transcriptional regulator, at 630,555 to 631,592
_RS04820
SGL_RS04825: SGL_RS04825 - hypothetical protein, at 631,896 to 632,093
_RS04825
SGL_RS04830: SGL_RS04830 - PhzF family phenazine biosynthesis protein, at 632,213 to 633,157
_RS04830
Position (kb) 630
631
632 Strain fitness (log2 ratio) -2
-1
0
1 at 629.681 kb on - strand, within SGL_RS04815 at 630.053 kb on + strand, within SGL_RS04815 at 630.292 kb on + strand, within SGL_RS04815 at 630.538 kb on + strand at 630.670 kb on - strand, within SGL_RS04820 at 630.741 kb on - strand, within SGL_RS04820 at 631.440 kb on + strand, within SGL_RS04820 at 631.659 kb on - strand at 631.869 kb on + strand at 631.917 kb on - strand, within SGL_RS04825 at 631.928 kb on - strand, within SGL_RS04825 at 632.066 kb on - strand, within SGL_RS04825 at 632.095 kb on + strand at 632.102 kb on - strand at 632.111 kb on - strand at 632.221 kb on - strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.464 kb on + strand, within SGL_RS04830 at 632.521 kb on - strand, within SGL_RS04830 at 632.570 kb on - strand, within SGL_RS04830
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 629,681 - SGL_RS04815 0.26 -0.2 630,053 + SGL_RS04815 0.59 +0.5 630,292 + SGL_RS04815 0.81 -0.4 630,538 + +0.3 630,670 - SGL_RS04820 0.11 -2.0 630,741 - SGL_RS04820 0.18 -1.8 631,440 + SGL_RS04820 0.85 -1.8 631,659 - -0.4 631,869 + +0.4 631,917 - SGL_RS04825 0.11 -1.3 631,928 - SGL_RS04825 0.16 +0.6 632,066 - SGL_RS04825 0.86 -1.8 632,095 + -0.0 632,102 - -0.1 632,111 - +0.2 632,221 - -0.1 632,242 - +0.7 632,242 - +0.1 632,464 + SGL_RS04830 0.27 -0.0 632,521 - SGL_RS04830 0.33 +0.1 632,570 - SGL_RS04830 0.38 -0.3
Or see this region's nucleotide sequence