Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04720 and SGL_RS19335 are separated by 91 nucleotides SGL_RS19335 and SGL_RS04725 are separated by 19 nucleotides SGL_RS04725 and SGL_RS04730 are separated by 57 nucleotides
SGL_RS04720: SGL_RS04720 - iron uptake porin, at 611,057 to 612,832
_RS04720
SGL_RS19335: SGL_RS19335 - hypothetical protein, at 612,924 to 613,082
_RS19335
SGL_RS04725: SGL_RS04725 - response regulator transcription factor, at 613,102 to 613,743
_RS04725
SGL_RS04730: SGL_RS04730 - N-acetylmuramoyl-L-alanine amidase, at 613,801 to 614,817
_RS04730
Position (kb) 613
614 Strain fitness (log2 ratio) -1
0
1
2 at 612.141 kb on + strand, within SGL_RS04720 at 612.252 kb on + strand, within SGL_RS04720 at 612.255 kb on - strand, within SGL_RS04720 at 612.260 kb on - strand, within SGL_RS04720 at 612.811 kb on - strand at 612.836 kb on - strand at 613.161 kb on - strand at 613.218 kb on - strand, within SGL_RS04725 at 613.312 kb on + strand, within SGL_RS04725 at 613.559 kb on - strand, within SGL_RS04725 at 613.659 kb on - strand, within SGL_RS04725 at 613.713 kb on - strand at 613.713 kb on - strand at 613.770 kb on + strand at 613.878 kb on - strand at 613.883 kb on - strand at 613.884 kb on + strand at 613.884 kb on + strand at 613.959 kb on + strand, within SGL_RS04730 at 613.970 kb on + strand, within SGL_RS04730 at 614.073 kb on + strand, within SGL_RS04730 at 614.113 kb on + strand, within SGL_RS04730 at 614.145 kb on + strand, within SGL_RS04730 at 614.153 kb on - strand, within SGL_RS04730 at 614.176 kb on - strand, within SGL_RS04730 at 614.216 kb on - strand, within SGL_RS04730 at 614.296 kb on - strand, within SGL_RS04730 at 614.364 kb on + strand, within SGL_RS04730 at 614.377 kb on + strand, within SGL_RS04730 at 614.551 kb on - strand, within SGL_RS04730 at 614.604 kb on - strand, within SGL_RS04730 at 614.623 kb on - strand, within SGL_RS04730 at 614.627 kb on + strand, within SGL_RS04730 at 614.706 kb on + strand, within SGL_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 612,141 + SGL_RS04720 0.61 -0.8 612,252 + SGL_RS04720 0.67 -0.8 612,255 - SGL_RS04720 0.67 -0.8 612,260 - SGL_RS04720 0.68 -0.6 612,811 - -0.8 612,836 - +0.4 613,161 - +1.1 613,218 - SGL_RS04725 0.18 +1.5 613,312 + SGL_RS04725 0.33 +1.0 613,559 - SGL_RS04725 0.71 +1.6 613,659 - SGL_RS04725 0.87 +0.9 613,713 - +1.5 613,713 - +0.1 613,770 + +0.9 613,878 - +0.6 613,883 - +0.7 613,884 + -0.0 613,884 + +0.7 613,959 + SGL_RS04730 0.16 +0.3 613,970 + SGL_RS04730 0.17 +2.1 614,073 + SGL_RS04730 0.27 +0.2 614,113 + SGL_RS04730 0.31 +0.6 614,145 + SGL_RS04730 0.34 -1.7 614,153 - SGL_RS04730 0.35 +0.4 614,176 - SGL_RS04730 0.37 +0.5 614,216 - SGL_RS04730 0.41 +0.4 614,296 - SGL_RS04730 0.49 +0.7 614,364 + SGL_RS04730 0.55 -0.1 614,377 + SGL_RS04730 0.57 +0.8 614,551 - SGL_RS04730 0.74 +0.4 614,604 - SGL_RS04730 0.79 +0.2 614,623 - SGL_RS04730 0.81 -0.0 614,627 + SGL_RS04730 0.81 +0.3 614,706 + SGL_RS04730 0.89 +0.7
Or see this region's nucleotide sequence