Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04480 and SGL_RS04485 are separated by 17 nucleotides SGL_RS04485 and SGL_RS04490 are separated by 50 nucleotides SGL_RS04490 and SGL_RS04495 are separated by 593 nucleotides
SGL_RS04480: SGL_RS04480 - urease subunit alpha, at 559,461 to 561,170
_RS04480
SGL_RS04485: SGL_RS04485 - DUF29 domain-containing protein, at 561,188 to 561,658
_RS04485
SGL_RS04490: SGL_RS04490 - 2TM domain-containing protein, at 561,709 to 561,963
_RS04490
SGL_RS04495: SGL_RS04495 - pentapeptide repeat-containing protein, at 562,557 to 563,045
_RS04495
Position (kb) 561
562 Strain fitness (log2 ratio) -1
0
1
2
3 at 560.731 kb on + strand, within SGL_RS04480 at 560.793 kb on - strand, within SGL_RS04480 at 560.855 kb on + strand, within SGL_RS04480 at 560.859 kb on + strand, within SGL_RS04480 at 560.993 kb on - strand, within SGL_RS04480 at 561.223 kb on + strand at 561.236 kb on + strand, within SGL_RS04485 at 561.247 kb on + strand, within SGL_RS04485 at 561.281 kb on + strand, within SGL_RS04485 at 561.289 kb on - strand, within SGL_RS04485 at 561.387 kb on + strand, within SGL_RS04485 at 561.395 kb on - strand, within SGL_RS04485 at 561.400 kb on + strand, within SGL_RS04485 at 561.568 kb on + strand, within SGL_RS04485 at 561.675 kb on - strand at 561.683 kb on - strand at 561.684 kb on + strand at 561.705 kb on + strand at 561.819 kb on - strand, within SGL_RS04490 at 561.852 kb on - strand, within SGL_RS04490 at 561.926 kb on - strand, within SGL_RS04490 at 561.946 kb on - strand at 561.956 kb on - strand at 562.093 kb on - strand at 562.104 kb on - strand at 562.127 kb on - strand at 562.165 kb on + strand at 562.168 kb on - strand at 562.629 kb on - strand, within SGL_RS04495 at 562.709 kb on - strand, within SGL_RS04495 at 562.808 kb on + strand, within SGL_RS04495 at 562.814 kb on - strand, within SGL_RS04495 at 562.814 kb on - strand, within SGL_RS04495 at 562.844 kb on - strand, within SGL_RS04495 at 562.909 kb on - strand, within SGL_RS04495 at 562.934 kb on - strand, within SGL_RS04495
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 560,731 + SGL_RS04480 0.74 -1.0 560,793 - SGL_RS04480 0.78 +0.1 560,855 + SGL_RS04480 0.82 +0.2 560,859 + SGL_RS04480 0.82 +0.7 560,993 - SGL_RS04480 0.90 -0.2 561,223 + -0.2 561,236 + SGL_RS04485 0.10 -0.1 561,247 + SGL_RS04485 0.13 +0.0 561,281 + SGL_RS04485 0.20 -0.2 561,289 - SGL_RS04485 0.21 -0.0 561,387 + SGL_RS04485 0.42 +0.3 561,395 - SGL_RS04485 0.44 +0.2 561,400 + SGL_RS04485 0.45 +0.1 561,568 + SGL_RS04485 0.81 +0.2 561,675 - +0.4 561,683 - +0.3 561,684 + -0.0 561,705 + +0.4 561,819 - SGL_RS04490 0.43 +1.1 561,852 - SGL_RS04490 0.56 +2.8 561,926 - SGL_RS04490 0.85 +1.2 561,946 - +1.4 561,956 - -0.2 562,093 - -0.2 562,104 - -0.4 562,127 - -0.1 562,165 + -0.5 562,168 - -0.1 562,629 - SGL_RS04495 0.15 +0.2 562,709 - SGL_RS04495 0.31 +0.0 562,808 + SGL_RS04495 0.51 -0.2 562,814 - SGL_RS04495 0.53 +0.2 562,814 - SGL_RS04495 0.53 +0.1 562,844 - SGL_RS04495 0.59 -0.6 562,909 - SGL_RS04495 0.72 +0.3 562,934 - SGL_RS04495 0.77 +0.1
Or see this region's nucleotide sequence