Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04210 and SGL_RS04215 are separated by 88 nucleotides SGL_RS04215 and SGL_RS04220 are separated by 129 nucleotides SGL_RS04220 and SGL_RS04225 are separated by 443 nucleotides
SGL_RS04210: SGL_RS04210 - methyl-accepting chemotaxis protein, at 492,130 to 494,739
_RS04210
SGL_RS04215: SGL_RS04215 - MlaE family lipid ABC transporter permease subunit, at 494,828 to 495,619
_RS04215
SGL_RS04220: SGL_RS04220 - TatA/E family twin arginine-targeting protein translocase, at 495,749 to 496,006
_RS04220
SGL_RS04225: SGL_RS04225 - sensor domain-containing diguanylate cyclase, at 496,450 to 497,844
_RS04225
Position (kb) 494
495
496 Strain fitness (log2 ratio) -1
0
1
2
3 at 493.836 kb on + strand, within SGL_RS04210 at 493.836 kb on + strand, within SGL_RS04210 at 493.844 kb on - strand, within SGL_RS04210 at 493.941 kb on + strand, within SGL_RS04210 at 494.020 kb on - strand, within SGL_RS04210 at 494.079 kb on + strand, within SGL_RS04210 at 494.164 kb on + strand, within SGL_RS04210 at 494.263 kb on - strand, within SGL_RS04210 at 494.482 kb on + strand at 494.485 kb on - strand at 494.485 kb on - strand at 494.515 kb on - strand at 494.595 kb on + strand at 494.646 kb on + strand at 494.740 kb on + strand at 494.740 kb on + strand at 494.740 kb on + strand at 494.740 kb on + strand at 494.740 kb on + strand at 494.745 kb on + strand at 494.748 kb on - strand at 494.748 kb on - strand at 494.748 kb on - strand at 494.748 kb on - strand at 494.946 kb on + strand, within SGL_RS04215 at 494.956 kb on - strand, within SGL_RS04215 at 495.038 kb on - strand, within SGL_RS04215 at 495.094 kb on - strand, within SGL_RS04215 at 495.272 kb on + strand, within SGL_RS04215 at 495.280 kb on - strand, within SGL_RS04215 at 495.400 kb on + strand, within SGL_RS04215 at 495.504 kb on - strand, within SGL_RS04215 at 495.532 kb on + strand, within SGL_RS04215 at 495.648 kb on + strand at 496.069 kb on + strand at 496.077 kb on - strand at 496.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 493,836 + SGL_RS04210 0.65 +0.3 493,836 + SGL_RS04210 0.65 +0.3 493,844 - SGL_RS04210 0.66 -0.1 493,941 + SGL_RS04210 0.69 -0.4 494,020 - SGL_RS04210 0.72 -0.0 494,079 + SGL_RS04210 0.75 +0.0 494,164 + SGL_RS04210 0.78 -0.4 494,263 - SGL_RS04210 0.82 -0.3 494,482 + +0.7 494,485 - +0.8 494,485 - +0.5 494,515 - +0.3 494,595 + -0.2 494,646 + +0.5 494,740 + -0.2 494,740 + -0.6 494,740 + +0.3 494,740 + -0.6 494,740 + +0.1 494,745 + +0.3 494,748 - +0.9 494,748 - +1.4 494,748 - +2.5 494,748 - +1.6 494,946 + SGL_RS04215 0.15 +2.5 494,956 - SGL_RS04215 0.16 +1.9 495,038 - SGL_RS04215 0.27 +2.5 495,094 - SGL_RS04215 0.34 +2.3 495,272 + SGL_RS04215 0.56 +2.4 495,280 - SGL_RS04215 0.57 +2.9 495,400 + SGL_RS04215 0.72 -0.1 495,504 - SGL_RS04215 0.85 +3.0 495,532 + SGL_RS04215 0.89 +1.8 495,648 + -0.1 496,069 + -0.8 496,077 - -0.6 496,084 - -0.0
Or see this region's nucleotide sequence