Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03960 and SGL_RS03965 are separated by 177 nucleotides SGL_RS03965 and SGL_RS03970 overlap by 21 nucleotides
SGL_RS03960: SGL_RS03960 - CHAT domain-containing protein, at 440,610 to 441,986
_RS03960
SGL_RS03965: SGL_RS03965 - R3H domain-containing nucleic acid-binding protein, at 442,164 to 443,933
_RS03965
SGL_RS03970: SGL_RS03970 - thiamine phosphate synthase, at 443,913 to 444,944
_RS03970
Position (kb) 442
443
444 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 441.359 kb on + strand, within SGL_RS03960 at 441.359 kb on + strand, within SGL_RS03960 at 441.359 kb on + strand, within SGL_RS03960 at 441.363 kb on + strand, within SGL_RS03960 at 441.403 kb on + strand, within SGL_RS03960 at 441.408 kb on + strand, within SGL_RS03960 at 441.422 kb on + strand, within SGL_RS03960 at 441.462 kb on + strand, within SGL_RS03960 at 441.579 kb on + strand, within SGL_RS03960 at 441.676 kb on + strand, within SGL_RS03960 at 441.731 kb on + strand, within SGL_RS03960 at 441.733 kb on - strand, within SGL_RS03960 at 441.740 kb on + strand, within SGL_RS03960 at 441.842 kb on + strand, within SGL_RS03960 at 441.857 kb on - strand at 441.961 kb on + strand at 442.047 kb on + strand at 442.146 kb on - strand at 442.232 kb on + strand at 442.309 kb on - strand at 442.406 kb on + strand, within SGL_RS03965 at 442.515 kb on + strand, within SGL_RS03965 at 442.533 kb on - strand, within SGL_RS03965 at 442.729 kb on - strand, within SGL_RS03965 at 442.729 kb on - strand, within SGL_RS03965 at 442.744 kb on + strand, within SGL_RS03965 at 442.744 kb on + strand, within SGL_RS03965 at 442.752 kb on - strand, within SGL_RS03965 at 442.752 kb on - strand, within SGL_RS03965 at 442.869 kb on + strand, within SGL_RS03965 at 442.940 kb on + strand, within SGL_RS03965 at 443.076 kb on + strand, within SGL_RS03965 at 443.093 kb on - strand, within SGL_RS03965 at 443.198 kb on + strand, within SGL_RS03965 at 443.358 kb on + strand, within SGL_RS03965 at 443.363 kb on + strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.371 kb on - strand, within SGL_RS03965 at 443.525 kb on + strand, within SGL_RS03965 at 443.561 kb on + strand, within SGL_RS03965 at 443.926 kb on - strand at 443.966 kb on + strand at 444.013 kb on - strand at 444.018 kb on - strand, within SGL_RS03970 at 444.072 kb on - strand, within SGL_RS03970 at 444.144 kb on + strand, within SGL_RS03970 at 444.152 kb on - strand, within SGL_RS03970 at 444.161 kb on + strand, within SGL_RS03970 at 444.426 kb on - strand, within SGL_RS03970 at 444.568 kb on + strand, within SGL_RS03970 at 444.623 kb on - strand, within SGL_RS03970 at 444.664 kb on - strand, within SGL_RS03970 at 444.783 kb on - strand, within SGL_RS03970 at 444.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 441,359 + SGL_RS03960 0.54 +0.3 441,359 + SGL_RS03960 0.54 -0.2 441,359 + SGL_RS03960 0.54 +0.1 441,363 + SGL_RS03960 0.55 +0.1 441,403 + SGL_RS03960 0.58 -0.0 441,408 + SGL_RS03960 0.58 -0.3 441,422 + SGL_RS03960 0.59 +0.6 441,462 + SGL_RS03960 0.62 +0.4 441,579 + SGL_RS03960 0.70 +0.4 441,676 + SGL_RS03960 0.77 -0.8 441,731 + SGL_RS03960 0.81 +0.0 441,733 - SGL_RS03960 0.82 -0.3 441,740 + SGL_RS03960 0.82 +0.1 441,842 + SGL_RS03960 0.89 -0.9 441,857 - +1.2 441,961 + -0.2 442,047 + -0.6 442,146 - +3.5 442,232 + +2.8 442,309 - +3.0 442,406 + SGL_RS03965 0.14 +2.9 442,515 + SGL_RS03965 0.20 +2.8 442,533 - SGL_RS03965 0.21 +2.5 442,729 - SGL_RS03965 0.32 +3.4 442,729 - SGL_RS03965 0.32 +3.0 442,744 + SGL_RS03965 0.33 +2.6 442,744 + SGL_RS03965 0.33 +3.0 442,752 - SGL_RS03965 0.33 +2.9 442,752 - SGL_RS03965 0.33 +3.4 442,869 + SGL_RS03965 0.40 +2.4 442,940 + SGL_RS03965 0.44 +1.6 443,076 + SGL_RS03965 0.52 +3.9 443,093 - SGL_RS03965 0.52 +2.9 443,198 + SGL_RS03965 0.58 +2.4 443,358 + SGL_RS03965 0.67 +3.1 443,363 + SGL_RS03965 0.68 +2.5 443,371 - SGL_RS03965 0.68 +2.9 443,371 - SGL_RS03965 0.68 +3.1 443,371 - SGL_RS03965 0.68 +3.6 443,525 + SGL_RS03965 0.77 +2.8 443,561 + SGL_RS03965 0.79 +3.2 443,926 - +2.9 443,966 + -2.7 444,013 - -2.7 444,018 - SGL_RS03970 0.10 -0.0 444,072 - SGL_RS03970 0.15 -2.7 444,144 + SGL_RS03970 0.22 -1.2 444,152 - SGL_RS03970 0.23 -1.5 444,161 + SGL_RS03970 0.24 -2.0 444,426 - SGL_RS03970 0.50 +0.8 444,568 + SGL_RS03970 0.63 -2.2 444,623 - SGL_RS03970 0.69 -0.8 444,664 - SGL_RS03970 0.73 -1.8 444,783 - SGL_RS03970 0.84 -1.2 444,899 - +0.8
Or see this region's nucleotide sequence