Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03900 and SGL_RS03905 are separated by 38 nucleotides SGL_RS03905 and SGL_RS03910 are separated by 74 nucleotides SGL_RS03910 and SGL_RS03915 are separated by 195 nucleotides SGL_RS03915 and SGL_RS03920 are separated by 254 nucleotides
SGL_RS03900: SGL_RS03900 - adenylate/guanylate cyclase domain-containing protein, at 425,468 to 427,738
_RS03900
SGL_RS03905: SGL_RS03905 - DUF928 domain-containing protein, at 427,777 to 428,544
_RS03905
SGL_RS03910: SGL_RS03910 - alpha/beta hydrolase, at 428,619 to 429,614
_RS03910
SGL_RS03915: SGL_RS03915 - DUF4870 domain-containing protein, at 429,810 to 430,169
_RS03915
SGL_RS03920: SGL_RS03920 - urease accessory protein UreG, at 430,424 to 431,044
_RS03920
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1 at 427.784 kb on + strand at 427.838 kb on - strand at 427.840 kb on + strand at 427.993 kb on + strand, within SGL_RS03905 at 428.000 kb on + strand, within SGL_RS03905 at 428.011 kb on - strand, within SGL_RS03905 at 428.011 kb on - strand, within SGL_RS03905 at 428.027 kb on - strand, within SGL_RS03905 at 428.107 kb on - strand, within SGL_RS03905 at 428.145 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.410 kb on - strand, within SGL_RS03905 at 428.502 kb on - strand at 428.606 kb on - strand at 428.737 kb on - strand, within SGL_RS03910 at 428.838 kb on + strand, within SGL_RS03910 at 428.846 kb on - strand, within SGL_RS03910 at 428.865 kb on - strand, within SGL_RS03910 at 428.880 kb on + strand, within SGL_RS03910 at 428.893 kb on + strand, within SGL_RS03910 at 428.961 kb on + strand, within SGL_RS03910 at 429.218 kb on - strand, within SGL_RS03910 at 429.264 kb on - strand, within SGL_RS03910 at 429.443 kb on - strand, within SGL_RS03910 at 429.472 kb on + strand, within SGL_RS03910 at 429.509 kb on + strand, within SGL_RS03910 at 429.515 kb on - strand at 429.551 kb on - strand at 429.574 kb on + strand at 429.610 kb on - strand at 429.794 kb on - strand at 429.804 kb on - strand at 429.979 kb on - strand, within SGL_RS03915 at 430.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 427,784 + -0.4 427,838 - -0.3 427,840 + -0.9 427,993 + SGL_RS03905 0.28 +0.2 428,000 + SGL_RS03905 0.29 -0.1 428,011 - SGL_RS03905 0.30 -0.3 428,011 - SGL_RS03905 0.30 -2.0 428,027 - SGL_RS03905 0.33 -0.4 428,107 - SGL_RS03905 0.43 -0.0 428,145 - SGL_RS03905 0.48 +0.7 428,374 - SGL_RS03905 0.78 +0.1 428,374 - SGL_RS03905 0.78 -1.0 428,374 - SGL_RS03905 0.78 -0.3 428,410 - SGL_RS03905 0.82 -0.0 428,502 - -0.1 428,606 - -1.0 428,737 - SGL_RS03910 0.12 +0.4 428,838 + SGL_RS03910 0.22 -0.1 428,846 - SGL_RS03910 0.23 -0.3 428,865 - SGL_RS03910 0.25 +0.3 428,880 + SGL_RS03910 0.26 +1.4 428,893 + SGL_RS03910 0.28 -0.2 428,961 + SGL_RS03910 0.34 +1.0 429,218 - SGL_RS03910 0.60 -0.0 429,264 - SGL_RS03910 0.65 -0.0 429,443 - SGL_RS03910 0.83 +0.2 429,472 + SGL_RS03910 0.86 -0.4 429,509 + SGL_RS03910 0.89 +0.2 429,515 - +0.6 429,551 - +0.1 429,574 + +0.7 429,610 - +0.7 429,794 - +0.9 429,804 - -0.9 429,979 - SGL_RS03915 0.47 +0.7 430,212 + +0.8
Or see this region's nucleotide sequence