Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03785 and SGL_RS03790 are separated by 158 nucleotides SGL_RS03790 and SGL_RS19170 are separated by 44 nucleotides SGL_RS19170 and SGL_RS03800 are separated by 79 nucleotides
SGL_RS03785: SGL_RS03785 - glycosyltransferase family 2 protein, at 396,057 to 396,878
_RS03785
SGL_RS03790: SGL_RS03790 - GTPase ObgE, at 397,037 to 398,143
_RS03790
SGL_RS19170: SGL_RS19170 - chlorophyll a/b-binding protein, at 398,188 to 398,361
_RS19170
SGL_RS03800: SGL_RS03800 - hydroxyacylglutathione hydrolase, at 398,441 to 399,214
_RS03800
Position (kb) 397
398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 396.062 kb on - strand at 396.097 kb on + strand at 396.401 kb on + strand, within SGL_RS03785 at 396.406 kb on + strand, within SGL_RS03785 at 396.408 kb on + strand, within SGL_RS03785 at 396.408 kb on + strand, within SGL_RS03785 at 396.416 kb on - strand, within SGL_RS03785 at 396.432 kb on - strand, within SGL_RS03785 at 396.432 kb on - strand, within SGL_RS03785 at 396.530 kb on - strand, within SGL_RS03785 at 396.530 kb on - strand, within SGL_RS03785 at 396.668 kb on - strand, within SGL_RS03785 at 396.949 kb on + strand at 396.957 kb on - strand at 396.957 kb on - strand at 396.964 kb on + strand at 397.149 kb on + strand, within SGL_RS03790 at 397.156 kb on - strand, within SGL_RS03790 at 397.167 kb on - strand, within SGL_RS03790 at 397.330 kb on - strand, within SGL_RS03790 at 397.363 kb on - strand, within SGL_RS03790 at 397.368 kb on - strand, within SGL_RS03790 at 397.497 kb on - strand, within SGL_RS03790 at 397.611 kb on - strand, within SGL_RS03790 at 397.673 kb on + strand, within SGL_RS03790 at 397.861 kb on + strand, within SGL_RS03790 at 398.045 kb on + strand at 398.052 kb on + strand at 398.108 kb on + strand at 398.211 kb on + strand, within SGL_RS19170 at 398.335 kb on + strand, within SGL_RS19170 at 398.345 kb on + strand at 398.345 kb on + strand at 398.355 kb on + strand at 398.363 kb on - strand at 398.411 kb on + strand at 398.611 kb on - strand, within SGL_RS03800 at 398.613 kb on + strand, within SGL_RS03800 at 398.613 kb on + strand, within SGL_RS03800 at 398.621 kb on - strand, within SGL_RS03800 at 398.655 kb on - strand, within SGL_RS03800 at 398.718 kb on + strand, within SGL_RS03800 at 398.749 kb on - strand, within SGL_RS03800 at 398.873 kb on + strand, within SGL_RS03800 at 399.019 kb on + strand, within SGL_RS03800 at 399.037 kb on + strand, within SGL_RS03800 at 399.096 kb on + strand, within SGL_RS03800 at 399.134 kb on - strand, within SGL_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 396,062 - -0.7 396,097 + -0.8 396,401 + SGL_RS03785 0.42 -0.8 396,406 + SGL_RS03785 0.42 -1.2 396,408 + SGL_RS03785 0.43 -1.7 396,408 + SGL_RS03785 0.43 -1.2 396,416 - SGL_RS03785 0.44 -1.0 396,432 - SGL_RS03785 0.46 -2.0 396,432 - SGL_RS03785 0.46 -0.2 396,530 - SGL_RS03785 0.58 -1.2 396,530 - SGL_RS03785 0.58 -0.8 396,668 - SGL_RS03785 0.74 -1.9 396,949 + -0.6 396,957 - +0.3 396,957 - -0.6 396,964 + -0.5 397,149 + SGL_RS03790 0.10 -2.0 397,156 - SGL_RS03790 0.11 -3.4 397,167 - SGL_RS03790 0.12 -2.2 397,330 - SGL_RS03790 0.26 -0.8 397,363 - SGL_RS03790 0.29 -1.5 397,368 - SGL_RS03790 0.30 -1.2 397,497 - SGL_RS03790 0.42 -0.8 397,611 - SGL_RS03790 0.52 -1.2 397,673 + SGL_RS03790 0.57 -2.4 397,861 + SGL_RS03790 0.74 -0.2 398,045 + +1.7 398,052 + -0.7 398,108 + +1.9 398,211 + SGL_RS19170 0.13 +0.2 398,335 + SGL_RS19170 0.84 -0.4 398,345 + -0.2 398,345 + -0.3 398,355 + -0.4 398,363 - -0.3 398,411 + -0.5 398,611 - SGL_RS03800 0.22 -0.6 398,613 + SGL_RS03800 0.22 +0.2 398,613 + SGL_RS03800 0.22 +0.1 398,621 - SGL_RS03800 0.23 -0.3 398,655 - SGL_RS03800 0.28 +0.5 398,718 + SGL_RS03800 0.36 -0.3 398,749 - SGL_RS03800 0.40 +0.1 398,873 + SGL_RS03800 0.56 +0.5 399,019 + SGL_RS03800 0.75 +0.2 399,037 + SGL_RS03800 0.77 +0.2 399,096 + SGL_RS03800 0.85 -0.4 399,134 - SGL_RS03800 0.90 +0.4
Or see this region's nucleotide sequence