Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03560 and SGL_RS03565 are separated by 34 nucleotides SGL_RS03565 and SGL_RS03570 are separated by 50 nucleotides SGL_RS03570 and SGL_RS03575 are separated by 151 nucleotides SGL_RS03575 and SGL_RS19770 are separated by 163 nucleotides
SGL_RS03560: SGL_RS03560 - class I SAM-dependent methyltransferase, at 355,990 to 357,210
_RS03560
SGL_RS03565: SGL_RS03565 - DUF29 domain-containing protein, at 357,245 to 357,697
_RS03565
SGL_RS03570: SGL_RS03570 - Uma2 family endonuclease, at 357,748 to 358,608
_RS03570
SGL_RS03575: SGL_RS03575 - Uma2 family endonuclease, at 358,760 to 359,350
_RS03575
SGL_RS19770: SGL_RS19770 - DUF4160 domain-containing protein, at 359,514 to 359,663
_RS19770
Position (kb) 357
358
359 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 356.820 kb on - strand, within SGL_RS03560 at 356.949 kb on + strand, within SGL_RS03560 at 356.959 kb on - strand, within SGL_RS03560 at 357.035 kb on - strand, within SGL_RS03560 at 357.433 kb on - strand, within SGL_RS03565 at 357.474 kb on + strand, within SGL_RS03565 at 357.487 kb on - strand, within SGL_RS03565 at 358.350 kb on + strand, within SGL_RS03570 at 358.357 kb on + strand, within SGL_RS03570 at 358.518 kb on + strand, within SGL_RS03570 at 358.545 kb on + strand at 358.553 kb on - strand at 359.135 kb on - strand, within SGL_RS03575 at 359.477 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 356,820 - SGL_RS03560 0.68 -5.4 356,949 + SGL_RS03560 0.79 -6.2 356,959 - SGL_RS03560 0.79 -6.5 357,035 - SGL_RS03560 0.86 -5.6 357,433 - SGL_RS03565 0.42 +0.1 357,474 + SGL_RS03565 0.51 +0.3 357,487 - SGL_RS03565 0.53 -0.0 358,350 + SGL_RS03570 0.70 -1.7 358,357 + SGL_RS03570 0.71 +0.2 358,518 + SGL_RS03570 0.89 -0.7 358,545 + +0.3 358,553 - -2.2 359,135 - SGL_RS03575 0.63 +0.1 359,477 - +0.1
Or see this region's nucleotide sequence