Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03565

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03560 and SGL_RS03565 are separated by 34 nucleotidesSGL_RS03565 and SGL_RS03570 are separated by 50 nucleotides SGL_RS03560: SGL_RS03560 - class I SAM-dependent methyltransferase, at 355,990 to 357,210 _RS03560 SGL_RS03565: SGL_RS03565 - DUF29 domain-containing protein, at 357,245 to 357,697 _RS03565 SGL_RS03570: SGL_RS03570 - Uma2 family endonuclease, at 357,748 to 358,608 _RS03570 Position (kb) 357 358Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 356.535 kb on + strand, within SGL_RS03560at 356.563 kb on - strand, within SGL_RS03560at 356.676 kb on - strand, within SGL_RS03560at 356.742 kb on + strand, within SGL_RS03560at 356.820 kb on - strand, within SGL_RS03560at 356.949 kb on + strand, within SGL_RS03560at 356.959 kb on - strand, within SGL_RS03560at 357.035 kb on - strand, within SGL_RS03560at 357.433 kb on - strand, within SGL_RS03565at 357.474 kb on + strand, within SGL_RS03565at 357.487 kb on - strand, within SGL_RS03565at 358.350 kb on + strand, within SGL_RS03570at 358.357 kb on + strand, within SGL_RS03570at 358.518 kb on + strand, within SGL_RS03570at 358.545 kb on + strandat 358.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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356,535 + SGL_RS03560 0.45 -2.4
356,563 - SGL_RS03560 0.47 -6.0
356,676 - SGL_RS03560 0.56 -6.5
356,742 + SGL_RS03560 0.62 -5.8
356,820 - SGL_RS03560 0.68 -5.4
356,949 + SGL_RS03560 0.79 -6.2
356,959 - SGL_RS03560 0.79 -6.5
357,035 - SGL_RS03560 0.86 -5.6
357,433 - SGL_RS03565 0.42 +0.1
357,474 + SGL_RS03565 0.51 +0.3
357,487 - SGL_RS03565 0.53 -0.0
358,350 + SGL_RS03570 0.70 -1.7
358,357 + SGL_RS03570 0.71 +0.2
358,518 + SGL_RS03570 0.89 -0.7
358,545 + +0.3
358,553 - -2.2

Or see this region's nucleotide sequence