Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03375 and SGL_RS03380 are separated by 251 nucleotides SGL_RS03380 and SGL_RS03385 are separated by 198 nucleotides
SGL_RS03375: SGL_RS03375 - hypothetical protein, at 320,785 to 321,447
_RS03375
SGL_RS03380: SGL_RS03380 - sulfite reductase, ferredoxin dependent, at 321,699 to 323,606
_RS03380
SGL_RS03385: SGL_RS03385 - FTR1 family protein, at 323,805 to 324,731
_RS03385
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -1
0
1
2
3 at 320.703 kb on + strand at 320.909 kb on + strand, within SGL_RS03375 at 320.928 kb on + strand, within SGL_RS03375 at 321.116 kb on - strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.176 kb on + strand, within SGL_RS03375 at 321.240 kb on - strand, within SGL_RS03375 at 321.332 kb on + strand, within SGL_RS03375 at 321.351 kb on - strand, within SGL_RS03375 at 321.368 kb on + strand, within SGL_RS03375 at 321.387 kb on + strand at 321.388 kb on + strand at 321.505 kb on + strand at 321.611 kb on - strand at 321.701 kb on - strand at 321.732 kb on - strand at 321.918 kb on - strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.956 kb on + strand, within SGL_RS03380 at 321.964 kb on - strand, within SGL_RS03380 at 321.964 kb on - strand, within SGL_RS03380 at 322.258 kb on + strand, within SGL_RS03380 at 322.417 kb on - strand, within SGL_RS03380 at 322.816 kb on - strand, within SGL_RS03380 at 322.920 kb on + strand, within SGL_RS03380 at 322.930 kb on + strand, within SGL_RS03380 at 322.958 kb on + strand, within SGL_RS03380 at 323.039 kb on + strand, within SGL_RS03380 at 323.204 kb on + strand, within SGL_RS03380 at 323.204 kb on + strand, within SGL_RS03380 at 323.212 kb on - strand, within SGL_RS03380 at 323.212 kb on - strand, within SGL_RS03380 at 323.238 kb on + strand, within SGL_RS03380 at 323.248 kb on - strand, within SGL_RS03380 at 323.305 kb on - strand, within SGL_RS03380 at 323.427 kb on - strand at 323.525 kb on + strand at 324.055 kb on - strand, within SGL_RS03385 at 324.182 kb on + strand, within SGL_RS03385 at 324.240 kb on + strand, within SGL_RS03385 at 324.248 kb on - strand, within SGL_RS03385 at 324.248 kb on - strand, within SGL_RS03385 at 324.391 kb on - strand, within SGL_RS03385 at 324.414 kb on + strand, within SGL_RS03385 at 324.510 kb on + strand, within SGL_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 320,703 + +0.2 320,909 + SGL_RS03375 0.19 +2.0 320,928 + SGL_RS03375 0.22 +0.1 321,116 - SGL_RS03375 0.50 -0.3 321,176 + SGL_RS03375 0.59 +0.4 321,176 + SGL_RS03375 0.59 +0.4 321,176 + SGL_RS03375 0.59 +0.9 321,240 - SGL_RS03375 0.69 +0.3 321,332 + SGL_RS03375 0.83 +0.2 321,351 - SGL_RS03375 0.85 +0.8 321,368 + SGL_RS03375 0.88 +1.8 321,387 + -0.2 321,388 + +1.8 321,505 + -0.4 321,611 - +0.0 321,701 - +2.8 321,732 - +2.4 321,918 - SGL_RS03380 0.11 +2.2 321,956 + SGL_RS03380 0.13 +2.5 321,956 + SGL_RS03380 0.13 +2.3 321,956 + SGL_RS03380 0.13 +3.1 321,964 - SGL_RS03380 0.14 +1.8 321,964 - SGL_RS03380 0.14 +2.7 322,258 + SGL_RS03380 0.29 +2.3 322,417 - SGL_RS03380 0.38 +1.2 322,816 - SGL_RS03380 0.59 +2.0 322,920 + SGL_RS03380 0.64 +2.0 322,930 + SGL_RS03380 0.65 +2.0 322,958 + SGL_RS03380 0.66 +2.1 323,039 + SGL_RS03380 0.70 +1.9 323,204 + SGL_RS03380 0.79 +1.9 323,204 + SGL_RS03380 0.79 +2.6 323,212 - SGL_RS03380 0.79 +2.6 323,212 - SGL_RS03380 0.79 +1.4 323,238 + SGL_RS03380 0.81 +2.4 323,248 - SGL_RS03380 0.81 +2.8 323,305 - SGL_RS03380 0.84 +1.6 323,427 - +2.1 323,525 + +3.4 324,055 - SGL_RS03385 0.27 -0.2 324,182 + SGL_RS03385 0.41 +0.3 324,240 + SGL_RS03385 0.47 +0.2 324,248 - SGL_RS03385 0.48 +1.0 324,248 - SGL_RS03385 0.48 +0.5 324,391 - SGL_RS03385 0.63 +0.7 324,414 + SGL_RS03385 0.66 +0.4 324,510 + SGL_RS03385 0.76 -0.5
Or see this region's nucleotide sequence