Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03360

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03350 and SGL_RS03355 are separated by 134 nucleotidesSGL_RS03355 and SGL_RS03360 are separated by 89 nucleotidesSGL_RS03360 and SGL_RS03365 are separated by 198 nucleotides SGL_RS03350: SGL_RS03350 - heme oxygenase (biliverdin-producing), at 317,127 to 317,849 _RS03350 SGL_RS03355: SGL_RS03355 - hypothetical protein, at 317,984 to 318,571 _RS03355 SGL_RS03360: SGL_RS03360 - 50S ribosomal protein L28, at 318,661 to 318,897 _RS03360 SGL_RS03365: SGL_RS03365 - Ycf66 family protein, at 319,096 to 320,529 _RS03365 Position (kb) 318 319Strain fitness (log2 ratio) -1 0 1at 317.989 kb on - strandat 318.004 kb on - strandat 318.054 kb on - strand, within SGL_RS03355at 318.061 kb on + strand, within SGL_RS03355at 318.428 kb on + strand, within SGL_RS03355at 318.436 kb on - strand, within SGL_RS03355at 318.436 kb on - strand, within SGL_RS03355at 318.438 kb on - strand, within SGL_RS03355at 318.508 kb on + strand, within SGL_RS03355at 318.833 kb on - strand, within SGL_RS03360at 318.849 kb on - strand, within SGL_RS03360at 318.924 kb on + strandat 319.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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317,989 - -1.6
318,004 - -0.3
318,054 - SGL_RS03355 0.12 +0.2
318,061 + SGL_RS03355 0.13 +0.1
318,428 + SGL_RS03355 0.76 +0.1
318,436 - SGL_RS03355 0.77 +0.5
318,436 - SGL_RS03355 0.77 +0.0
318,438 - SGL_RS03355 0.77 +0.8
318,508 + SGL_RS03355 0.89 +0.4
318,833 - SGL_RS03360 0.73 +1.0
318,849 - SGL_RS03360 0.79 +0.8
318,924 + +0.6
319,009 - -0.5

Or see this region's nucleotide sequence