Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03300 and SGL_RS03305 are separated by 48 nucleotides SGL_RS03305 and SGL_RS03310 are separated by 19 nucleotides
SGL_RS03300: SGL_RS03300 - pilus motility taxis protein HmpF, at 303,939 to 305,546
_RS03300
SGL_RS03305: SGL_RS03305 - CO2 hydration protein, at 305,595 to 306,824
_RS03305
SGL_RS03310: SGL_RS03310 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 306,844 to 308,076
_RS03310
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1 at 305.018 kb on - strand, within SGL_RS03300 at 305.468 kb on + strand at 306.266 kb on - strand, within SGL_RS03305 at 306.380 kb on + strand, within SGL_RS03305 at 306.393 kb on - strand, within SGL_RS03305 at 306.406 kb on + strand, within SGL_RS03305 at 306.499 kb on - strand, within SGL_RS03305 at 306.688 kb on + strand, within SGL_RS03305 at 306.696 kb on + strand, within SGL_RS03305 at 306.803 kb on + strand at 306.812 kb on - strand at 306.899 kb on + strand at 306.915 kb on - strand at 307.164 kb on + strand, within SGL_RS03310 at 307.164 kb on + strand, within SGL_RS03310 at 307.164 kb on + strand, within SGL_RS03310 at 307.174 kb on - strand, within SGL_RS03310 at 307.207 kb on + strand, within SGL_RS03310 at 307.216 kb on - strand, within SGL_RS03310 at 307.245 kb on - strand, within SGL_RS03310 at 307.433 kb on + strand, within SGL_RS03310 at 307.441 kb on - strand, within SGL_RS03310 at 307.571 kb on - strand, within SGL_RS03310 at 307.608 kb on - strand, within SGL_RS03310 at 307.670 kb on - strand, within SGL_RS03310 at 307.687 kb on - strand, within SGL_RS03310 at 307.725 kb on + strand, within SGL_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 305,018 - SGL_RS03300 0.67 +0.7 305,468 + -0.1 306,266 - SGL_RS03305 0.55 +0.4 306,380 + SGL_RS03305 0.64 +0.9 306,393 - SGL_RS03305 0.65 +1.4 306,406 + SGL_RS03305 0.66 +0.7 306,499 - SGL_RS03305 0.73 +0.7 306,688 + SGL_RS03305 0.89 +0.9 306,696 + SGL_RS03305 0.90 +1.1 306,803 + -1.4 306,812 - +0.5 306,899 + -0.2 306,915 - +0.2 307,164 + SGL_RS03310 0.26 -0.1 307,164 + SGL_RS03310 0.26 -0.7 307,164 + SGL_RS03310 0.26 +0.3 307,174 - SGL_RS03310 0.27 -0.0 307,207 + SGL_RS03310 0.29 -0.3 307,216 - SGL_RS03310 0.30 +0.1 307,245 - SGL_RS03310 0.33 -0.5 307,433 + SGL_RS03310 0.48 -0.5 307,441 - SGL_RS03310 0.48 -0.4 307,571 - SGL_RS03310 0.59 -0.5 307,608 - SGL_RS03310 0.62 +0.1 307,670 - SGL_RS03310 0.67 +0.6 307,687 - SGL_RS03310 0.68 -0.2 307,725 + SGL_RS03310 0.71 -0.2
Or see this region's nucleotide sequence