Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03265

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03260 and SGL_RS03265 are separated by 149 nucleotidesSGL_RS03265 and SGL_RS03270 are separated by 194 nucleotidesSGL_RS03270 and SGL_RS20110 are separated by 245 nucleotides SGL_RS03260: SGL_RS03260 - FUSC family protein, at 295,076 to 297,343 _RS03260 SGL_RS03265: SGL_RS03265 - photosystem II complex extrinsic protein PsbU, at 297,493 to 297,888 _RS03265 SGL_RS03270: SGL_RS03270 - HNH endonuclease, at 298,083 to 298,580 _RS03270 SGL_RS20110: SGL_RS20110 - hypothetical protein, at 298,826 to 298,957 _RS20110 Position (kb) 297 298Strain fitness (log2 ratio) -1 0 1 2 3at 296.549 kb on - strand, within SGL_RS03260at 296.711 kb on + strand, within SGL_RS03260at 296.719 kb on - strand, within SGL_RS03260at 296.719 kb on - strand, within SGL_RS03260at 296.881 kb on + strand, within SGL_RS03260at 297.288 kb on - strandat 297.780 kb on - strand, within SGL_RS03265at 297.906 kb on - strandat 298.312 kb on - strand, within SGL_RS03270at 298.386 kb on + strand, within SGL_RS03270at 298.495 kb on + strand, within SGL_RS03270at 298.536 kb on + strandat 298.870 kb on + strand, within SGL_RS20110

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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296,549 - SGL_RS03260 0.65 +0.1
296,711 + SGL_RS03260 0.72 -0.5
296,719 - SGL_RS03260 0.72 -0.2
296,719 - SGL_RS03260 0.72 +0.7
296,881 + SGL_RS03260 0.80 -0.1
297,288 - +0.2
297,780 - SGL_RS03265 0.72 +2.8
297,906 - +3.1
298,312 - SGL_RS03270 0.46 -0.3
298,386 + SGL_RS03270 0.61 +0.9
298,495 + SGL_RS03270 0.83 +0.3
298,536 + +1.0
298,870 + SGL_RS20110 0.33 +0.2

Or see this region's nucleotide sequence