Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02835 and SGL_RS02840 are separated by 156 nucleotides SGL_RS02840 and SGL_RS02845 are separated by 99 nucleotides SGL_RS02845 and SGL_RS02850 are separated by 69 nucleotides
SGL_RS02835: SGL_RS02835 - TAXI family TRAP transporter solute-binding subunit, at 206,863 to 208,392
_RS02835
SGL_RS02840: SGL_RS02840 - MBL fold metallo-hydrolase, at 208,549 to 209,427
_RS02840
SGL_RS02845: SGL_RS02845 - thylakoid membrane protein, at 209,527 to 209,826
_RS02845
SGL_RS02850: SGL_RS02850 - uracil phosphoribosyltransferase, at 209,896 to 210,546
_RS02850
Position (kb) 208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 207.780 kb on - strand, within SGL_RS02835 at 208.194 kb on + strand, within SGL_RS02835 at 208.348 kb on - strand at 208.473 kb on + strand at 209.094 kb on - strand, within SGL_RS02840 at 209.134 kb on + strand, within SGL_RS02840 at 209.144 kb on + strand, within SGL_RS02840 at 209.337 kb on + strand, within SGL_RS02840 at 209.362 kb on - strand at 209.366 kb on + strand at 209.378 kb on + strand at 209.477 kb on - strand at 209.494 kb on - strand at 209.517 kb on - strand at 209.573 kb on + strand, within SGL_RS02845 at 209.727 kb on - strand, within SGL_RS02845 at 209.924 kb on + strand at 209.933 kb on - strand at 209.950 kb on - strand at 209.950 kb on - strand at 210.066 kb on - strand, within SGL_RS02850 at 210.102 kb on - strand, within SGL_RS02850 at 210.270 kb on - strand, within SGL_RS02850 at 210.341 kb on - strand, within SGL_RS02850 at 210.415 kb on - strand, within SGL_RS02850
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 207,780 - SGL_RS02835 0.60 +0.1 208,194 + SGL_RS02835 0.87 +0.2 208,348 - -0.6 208,473 + -0.1 209,094 - SGL_RS02840 0.62 -1.3 209,134 + SGL_RS02840 0.67 -1.1 209,144 + SGL_RS02840 0.68 -3.0 209,337 + SGL_RS02840 0.90 -2.0 209,362 - -1.9 209,366 + -1.8 209,378 + -1.5 209,477 - +0.6 209,494 - -1.0 209,517 - -0.2 209,573 + SGL_RS02845 0.15 +3.7 209,727 - SGL_RS02845 0.67 +3.1 209,924 + +4.7 209,933 - +3.9 209,950 - +4.6 209,950 - +4.7 210,066 - SGL_RS02850 0.26 +4.4 210,102 - SGL_RS02850 0.32 +5.0 210,270 - SGL_RS02850 0.57 +5.1 210,341 - SGL_RS02850 0.68 +4.1 210,415 - SGL_RS02850 0.80 +4.3
Or see this region's nucleotide sequence