Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02780 and SGL_RS02785 are separated by 3 nucleotides SGL_RS02785 and SGL_RS02790 are separated by 75 nucleotides SGL_RS02790 and SGL_RS02795 are separated by 67 nucleotides
SGL_RS02780: SGL_RS02780 - dihydrolipoyl dehydrogenase, at 192,882 to 194,306
_RS02780
SGL_RS02785: SGL_RS02785 - CRR6 family NdhI maturation factor, at 194,310 to 194,801
_RS02785
SGL_RS02790: SGL_RS02790 - HEAT repeat domain-containing protein, at 194,877 to 195,617
_RS02790
SGL_RS02795: SGL_RS02795 - flavin prenyltransferase UbiX, at 195,685 to 196,305
_RS02795
Position (kb) 194
195 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 194.294 kb on - strand at 194.309 kb on - strand at 194.309 kb on - strand at 194.355 kb on - strand at 194.421 kb on + strand, within SGL_RS02785 at 194.445 kb on - strand, within SGL_RS02785 at 194.667 kb on - strand, within SGL_RS02785 at 194.735 kb on - strand, within SGL_RS02785 at 194.757 kb on + strand at 194.817 kb on + strand at 194.830 kb on - strand at 194.830 kb on - strand at 195.096 kb on + strand, within SGL_RS02790 at 195.215 kb on - strand, within SGL_RS02790 at 195.220 kb on - strand, within SGL_RS02790 at 195.255 kb on + strand, within SGL_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 194,294 - -5.2 194,309 - +0.1 194,309 - +0.3 194,355 - -2.2 194,421 + SGL_RS02785 0.23 -2.3 194,445 - SGL_RS02785 0.27 -3.3 194,667 - SGL_RS02785 0.73 -2.2 194,735 - SGL_RS02785 0.86 -2.5 194,757 + -2.4 194,817 + -0.2 194,830 - +0.1 194,830 - +0.2 195,096 + SGL_RS02790 0.30 -1.3 195,215 - SGL_RS02790 0.46 -1.6 195,220 - SGL_RS02790 0.46 -2.3 195,255 + SGL_RS02790 0.51 -1.5
Or see this region's nucleotide sequence