Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02730

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02725 and SGL_RS02730 are separated by 194 nucleotidesSGL_RS02730 and SGL_RS02735 are separated by 85 nucleotides SGL_RS02725: SGL_RS02725 - MoxR family ATPase, at 182,354 to 183,298 _RS02725 SGL_RS02730: SGL_RS02730 - iron-sulfur cluster assembly accessory protein, at 183,493 to 183,849 _RS02730 SGL_RS02735: SGL_RS02735 - DMT family transporter, at 183,935 to 184,924 _RS02735 Position (kb) 183 184Strain fitness (log2 ratio) -1 0 1 2at 182.498 kb on - strand, within SGL_RS02725at 182.554 kb on - strand, within SGL_RS02725at 182.616 kb on + strand, within SGL_RS02725at 182.704 kb on + strand, within SGL_RS02725at 182.748 kb on + strand, within SGL_RS02725at 182.749 kb on - strand, within SGL_RS02725at 182.770 kb on - strand, within SGL_RS02725at 182.868 kb on + strand, within SGL_RS02725at 182.868 kb on + strand, within SGL_RS02725at 182.947 kb on + strand, within SGL_RS02725at 182.956 kb on - strand, within SGL_RS02725at 182.996 kb on + strand, within SGL_RS02725at 183.035 kb on + strand, within SGL_RS02725at 183.479 kb on + strandat 183.563 kb on - strand, within SGL_RS02730at 183.631 kb on - strand, within SGL_RS02730at 183.633 kb on + strand, within SGL_RS02730at 184.258 kb on + strand, within SGL_RS02735at 184.286 kb on + strand, within SGL_RS02735at 184.338 kb on - strand, within SGL_RS02735at 184.355 kb on + strand, within SGL_RS02735at 184.542 kb on + strand, within SGL_RS02735at 184.771 kb on + strand, within SGL_RS02735

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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182,498 - SGL_RS02725 0.15 +0.3
182,554 - SGL_RS02725 0.21 +0.2
182,616 + SGL_RS02725 0.28 +0.6
182,704 + SGL_RS02725 0.37 +0.5
182,748 + SGL_RS02725 0.42 +0.8
182,749 - SGL_RS02725 0.42 +0.2
182,770 - SGL_RS02725 0.44 +0.6
182,868 + SGL_RS02725 0.54 +0.4
182,868 + SGL_RS02725 0.54 +0.7
182,947 + SGL_RS02725 0.63 +0.6
182,956 - SGL_RS02725 0.64 +1.4
182,996 + SGL_RS02725 0.68 +0.3
183,035 + SGL_RS02725 0.72 +0.4
183,479 + +0.4
183,563 - SGL_RS02730 0.20 +1.9
183,631 - SGL_RS02730 0.39 +1.5
183,633 + SGL_RS02730 0.39 +0.7
184,258 + SGL_RS02735 0.33 -0.5
184,286 + SGL_RS02735 0.35 -0.3
184,338 - SGL_RS02735 0.41 +0.7
184,355 + SGL_RS02735 0.42 -0.2
184,542 + SGL_RS02735 0.61 +0.0
184,771 + SGL_RS02735 0.84 +0.0

Or see this region's nucleotide sequence