Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02615 and SGL_RS19540 are separated by 74 nucleotides SGL_RS19540 and SGL_RS18655 are separated by 42 nucleotides SGL_RS18655 and SGL_RS02620 are separated by 164 nucleotides SGL_RS02620 and SGL_RS02625 are separated by 29 nucleotides SGL_RS02625 and SGL_RS02630 are separated by 125 nucleotides
SGL_RS02615: SGL_RS02615 - metallophosphoesterase, at 158,757 to 159,737
_RS02615
SGL_RS19540: SGL_RS19540 - hypothetical protein, at 159,812 to 159,961
_RS19540
SGL_RS18655: SGL_RS18655 - cytochrome b6-f complex subunit PetN, at 160,004 to 160,093
_RS18655
SGL_RS02620: SGL_RS02620 - RDD family protein, at 160,258 to 161,058
_RS02620
SGL_RS02625: SGL_RS02625 - peroxiredoxin, at 161,088 to 161,642
_RS02625
SGL_RS02630: SGL_RS02630 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 161,768 to 163,663
_RS02630
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2 at 159.273 kb on - strand, within SGL_RS02615 at 159.386 kb on + strand, within SGL_RS02615 at 159.526 kb on - strand, within SGL_RS02615 at 159.625 kb on + strand, within SGL_RS02615 at 159.643 kb on - strand at 160.416 kb on - strand, within SGL_RS02620 at 160.534 kb on + strand, within SGL_RS02620 at 160.829 kb on + strand, within SGL_RS02620 at 160.842 kb on + strand, within SGL_RS02620 at 160.850 kb on - strand, within SGL_RS02620 at 160.898 kb on - strand, within SGL_RS02620 at 160.899 kb on - strand, within SGL_RS02620 at 161.138 kb on - strand at 161.241 kb on - strand, within SGL_RS02625 at 161.250 kb on + strand, within SGL_RS02625 at 161.316 kb on + strand, within SGL_RS02625 at 161.546 kb on + strand, within SGL_RS02625
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 159,273 - SGL_RS02615 0.53 -1.1 159,386 + SGL_RS02615 0.64 -0.5 159,526 - SGL_RS02615 0.78 +0.1 159,625 + SGL_RS02615 0.88 -0.7 159,643 - -0.4 160,416 - SGL_RS02620 0.20 +0.2 160,534 + SGL_RS02620 0.34 +1.9 160,829 + SGL_RS02620 0.71 +1.3 160,842 + SGL_RS02620 0.73 +0.7 160,850 - SGL_RS02620 0.74 +1.5 160,898 - SGL_RS02620 0.80 +0.6 160,899 - SGL_RS02620 0.80 +0.8 161,138 - -0.4 161,241 - SGL_RS02625 0.28 +0.8 161,250 + SGL_RS02625 0.29 -0.1 161,316 + SGL_RS02625 0.41 +0.0 161,546 + SGL_RS02625 0.83 +0.2
Or see this region's nucleotide sequence