Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02460 and SGL_RS02465 are separated by 161 nucleotides SGL_RS02465 and SGL_RS02470 are separated by 75 nucleotides SGL_RS02470 and SGL_RS02475 are separated by 63 nucleotides SGL_RS02475 and SGL_RS02480 are separated by 259 nucleotides
SGL_RS02460: SGL_RS02460 - phosphate signaling complex protein PhoU, at 131,116 to 131,790
_RS02460
SGL_RS02465: SGL_RS02465 - ribosome maturation factor RimP, at 131,952 to 132,407
_RS02465
SGL_RS02470: SGL_RS02470 - transcription termination factor NusA, at 132,483 to 133,859
_RS02470
SGL_RS02475: SGL_RS02475 - YlxR family protein, at 133,923 to 134,177
_RS02475
SGL_RS02480: SGL_RS02480 - translation initiation factor IF-2, at 134,437 to 137,442
_RS02480
Position (kb) 132
133
134 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 131.639 kb on + strand, within SGL_RS02460 at 131.645 kb on - strand, within SGL_RS02460 at 131.646 kb on - strand, within SGL_RS02460 at 131.785 kb on + strand at 131.844 kb on + strand at 132.380 kb on + strand at 132.382 kb on + strand at 133.662 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.675 kb on - strand, within SGL_RS02470 at 133.700 kb on - strand, within SGL_RS02470 at 133.768 kb on + strand at 133.832 kb on + strand at 133.866 kb on - strand at 133.893 kb on + strand at 134.002 kb on + strand, within SGL_RS02475 at 134.111 kb on + strand, within SGL_RS02475
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 131,639 + SGL_RS02460 0.77 -3.8 131,645 - SGL_RS02460 0.78 -4.2 131,646 - SGL_RS02460 0.79 -4.5 131,785 + -0.2 131,844 + -5.0 132,380 + -2.1 132,382 + -2.6 133,662 + SGL_RS02470 0.86 -4.9 133,667 + SGL_RS02470 0.86 -1.8 133,667 + SGL_RS02470 0.86 -0.7 133,667 + SGL_RS02470 0.86 -1.1 133,675 - SGL_RS02470 0.87 -1.1 133,700 - SGL_RS02470 0.88 -3.5 133,768 + -0.0 133,832 + -0.2 133,866 - -1.2 133,893 + +0.1 134,002 + SGL_RS02475 0.31 +3.8 134,111 + SGL_RS02475 0.74 +1.0
Or see this region's nucleotide sequence