Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02365

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02360 and SGL_RS02365 are separated by 130 nucleotidesSGL_RS02365 and SGL_RS02370 are separated by 249 nucleotidesSGL_RS02370 and SGL_RS02375 overlap by 4 nucleotides SGL_RS02360: SGL_RS02360 - O-antigen ligase, at 112,860 to 114,188 _RS02360 SGL_RS02365: SGL_RS02365 - DUF3181 family protein, at 114,319 to 114,624 _RS02365 SGL_RS02370: SGL_RS02370 - DUF3119 family protein, at 114,874 to 115,272 _RS02370 SGL_RS02375: SGL_RS02375 - DUF3086 domain-containing protein, at 115,269 to 116,477 _RS02375 Position (kb) 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1at 113.380 kb on + strand, within SGL_RS02360at 114.339 kb on - strandat 114.494 kb on - strand, within SGL_RS02365at 114.713 kb on - strandat 114.788 kb on + strandat 114.856 kb on + strandat 114.856 kb on + strandat 114.884 kb on + strandat 114.978 kb on + strand, within SGL_RS02370at 115.049 kb on + strand, within SGL_RS02370at 115.415 kb on + strand, within SGL_RS02375at 115.512 kb on + strand, within SGL_RS02375at 115.586 kb on + strand, within SGL_RS02375at 115.586 kb on + strand, within SGL_RS02375

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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113,380 + SGL_RS02360 0.39 -2.1
114,339 - -0.5
114,494 - SGL_RS02365 0.57 +0.2
114,713 - -0.4
114,788 + +0.1
114,856 + -0.8
114,856 + -0.6
114,884 + +0.2
114,978 + SGL_RS02370 0.26 +0.3
115,049 + SGL_RS02370 0.44 -0.0
115,415 + SGL_RS02375 0.12 -3.5
115,512 + SGL_RS02375 0.20 -2.1
115,586 + SGL_RS02375 0.26 -2.2
115,586 + SGL_RS02375 0.26 -1.9

Or see this region's nucleotide sequence