Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02090 and SGL_RS02095 are separated by 11 nucleotides SGL_RS02095 and SGL_RS02100 are separated by 5 nucleotides SGL_RS02100 and SGL_RS02105 are separated by 115 nucleotides
SGL_RS02090: SGL_RS02090 - hydrogenase formation protein HypD, at 54,533 to 55,657
_RS02090
SGL_RS02095: SGL_RS02095 - dTDP-4-dehydrorhamnose reductase, at 55,669 to 56,550
_RS02095
SGL_RS02100: SGL_RS02100 - peptide-methionine (S)-S-oxide reductase MsrA, at 56,556 to 57,224
_RS02100
SGL_RS02105: SGL_RS02105 - glycogen synthase GlgA, at 57,340 to 58,815
_RS02105
Position (kb) 55
56
57 Strain fitness (log2 ratio) -1
0
1
2 at 54.717 kb on + strand, within SGL_RS02090 at 54.754 kb on + strand, within SGL_RS02090 at 54.762 kb on + strand, within SGL_RS02090 at 55.211 kb on - strand, within SGL_RS02090 at 55.289 kb on + strand, within SGL_RS02090 at 55.291 kb on - strand, within SGL_RS02090 at 55.330 kb on + strand, within SGL_RS02090 at 55.340 kb on + strand, within SGL_RS02090 at 55.365 kb on + strand, within SGL_RS02090 at 55.582 kb on + strand at 55.734 kb on + strand at 55.842 kb on + strand, within SGL_RS02095 at 56.098 kb on - strand, within SGL_RS02095 at 56.326 kb on + strand, within SGL_RS02095 at 56.353 kb on + strand, within SGL_RS02095 at 56.353 kb on + strand, within SGL_RS02095 at 56.356 kb on - strand, within SGL_RS02095 at 56.447 kb on - strand, within SGL_RS02095 at 56.753 kb on + strand, within SGL_RS02100 at 56.813 kb on - strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.848 kb on + strand, within SGL_RS02100 at 56.851 kb on - strand, within SGL_RS02100 at 56.857 kb on - strand, within SGL_RS02100 at 57.022 kb on - strand, within SGL_RS02100 at 57.177 kb on - strand at 57.257 kb on + strand at 57.299 kb on + strand at 57.332 kb on - strand at 57.345 kb on - strand at 57.352 kb on - strand at 57.408 kb on - strand at 57.457 kb on - strand at 57.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 54,717 + SGL_RS02090 0.16 -0.4 54,754 + SGL_RS02090 0.20 +0.2 54,762 + SGL_RS02090 0.20 +0.2 55,211 - SGL_RS02090 0.60 -0.1 55,289 + SGL_RS02090 0.67 +0.8 55,291 - SGL_RS02090 0.67 -0.3 55,330 + SGL_RS02090 0.71 -0.2 55,340 + SGL_RS02090 0.72 -0.4 55,365 + SGL_RS02090 0.74 -0.1 55,582 + +0.2 55,734 + +1.2 55,842 + SGL_RS02095 0.20 -0.3 56,098 - SGL_RS02095 0.49 +0.8 56,326 + SGL_RS02095 0.74 +1.4 56,353 + SGL_RS02095 0.78 +1.3 56,353 + SGL_RS02095 0.78 +0.9 56,356 - SGL_RS02095 0.78 +1.9 56,447 - SGL_RS02095 0.88 +0.8 56,753 + SGL_RS02100 0.29 +0.5 56,813 - SGL_RS02100 0.38 +0.3 56,848 + SGL_RS02100 0.44 +0.1 56,848 + SGL_RS02100 0.44 +0.4 56,851 - SGL_RS02100 0.44 +0.5 56,857 - SGL_RS02100 0.45 +0.6 57,022 - SGL_RS02100 0.70 +0.1 57,177 - +0.6 57,257 + -0.1 57,299 + +0.2 57,332 - -0.2 57,345 - -0.3 57,352 - -0.1 57,408 - -0.2 57,457 - +0.3 57,457 - +0.0
Or see this region's nucleotide sequence