Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02000

Experiment: Nickel (II) sulfate 5 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01990 and SGL_RS01995 are separated by 69 nucleotidesSGL_RS01995 and SGL_RS02000 overlap by 17 nucleotidesSGL_RS02000 and SGL_RS02005 are separated by 346 nucleotides SGL_RS01990: SGL_RS01990 - TonB-dependent siderophore receptor, at 29,968 to 32,454 _RS01990 SGL_RS01995: SGL_RS01995 - biopolymer transporter ExbD, at 32,524 to 32,928 _RS01995 SGL_RS02000: SGL_RS02000 - MotA/TolQ/ExbB proton channel family protein, at 32,912 to 33,544 _RS02000 SGL_RS02005: SGL_RS02005 - energy transducer TonB, at 33,891 to 35,489 _RS02005 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 31.939 kb on + strand, within SGL_RS01990at 31.993 kb on + strand, within SGL_RS01990at 32.013 kb on + strand, within SGL_RS01990at 32.013 kb on + strand, within SGL_RS01990at 32.182 kb on + strand, within SGL_RS01990at 32.182 kb on + strand, within SGL_RS01990at 32.202 kb on + strand, within SGL_RS01990at 32.210 kb on - strandat 32.228 kb on + strandat 32.233 kb on + strandat 32.236 kb on - strandat 32.277 kb on + strandat 32.292 kb on - strandat 32.386 kb on + strandat 32.419 kb on + strandat 32.431 kb on + strandat 32.571 kb on + strand, within SGL_RS01995at 32.704 kb on - strand, within SGL_RS01995at 32.903 kb on + strandat 32.911 kb on - strandat 33.016 kb on + strand, within SGL_RS02000at 33.039 kb on + strand, within SGL_RS02000at 33.044 kb on + strand, within SGL_RS02000at 33.071 kb on + strand, within SGL_RS02000at 33.071 kb on + strand, within SGL_RS02000at 33.086 kb on + strand, within SGL_RS02000at 33.151 kb on - strand, within SGL_RS02000at 33.361 kb on - strand, within SGL_RS02000at 33.571 kb on + strandat 33.574 kb on - strandat 33.969 kb on + strandat 34.012 kb on - strandat 34.014 kb on - strandat 34.047 kb on - strandat 34.072 kb on + strand, within SGL_RS02005at 34.089 kb on - strand, within SGL_RS02005at 34.151 kb on + strand, within SGL_RS02005at 34.194 kb on + strand, within SGL_RS02005at 34.199 kb on + strand, within SGL_RS02005at 34.229 kb on + strand, within SGL_RS02005at 34.229 kb on + strand, within SGL_RS02005at 34.236 kb on + strand, within SGL_RS02005at 34.277 kb on - strand, within SGL_RS02005at 34.310 kb on + strand, within SGL_RS02005at 34.318 kb on - strand, within SGL_RS02005at 34.318 kb on - strand, within SGL_RS02005at 34.348 kb on - strand, within SGL_RS02005at 34.372 kb on - strand, within SGL_RS02005at 34.372 kb on - strand, within SGL_RS02005at 34.376 kb on + strand, within SGL_RS02005at 34.384 kb on - strand, within SGL_RS02005at 34.394 kb on - strand, within SGL_RS02005at 34.394 kb on - strand, within SGL_RS02005at 34.531 kb on - strand, within SGL_RS02005

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM
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31,939 + SGL_RS01990 0.79 +2.4
31,993 + SGL_RS01990 0.81 +1.8
32,013 + SGL_RS01990 0.82 +1.5
32,013 + SGL_RS01990 0.82 +1.3
32,182 + SGL_RS01990 0.89 +2.1
32,182 + SGL_RS01990 0.89 +1.7
32,202 + SGL_RS01990 0.90 +1.9
32,210 - +1.8
32,228 + +1.9
32,233 + +1.9
32,236 - +1.6
32,277 + +2.1
32,292 - +1.5
32,386 + +2.1
32,419 + +1.9
32,431 + +1.9
32,571 + SGL_RS01995 0.12 +1.8
32,704 - SGL_RS01995 0.44 +2.0
32,903 + +1.2
32,911 - +2.0
33,016 + SGL_RS02000 0.16 +1.5
33,039 + SGL_RS02000 0.20 +1.6
33,044 + SGL_RS02000 0.21 +1.5
33,071 + SGL_RS02000 0.25 +1.7
33,071 + SGL_RS02000 0.25 +1.5
33,086 + SGL_RS02000 0.27 +1.1
33,151 - SGL_RS02000 0.38 +1.5
33,361 - SGL_RS02000 0.71 +2.4
33,571 + +2.0
33,574 - +1.5
33,969 + +0.0
34,012 - +0.4
34,014 - +0.6
34,047 - +0.4
34,072 + SGL_RS02005 0.11 +0.2
34,089 - SGL_RS02005 0.12 +0.5
34,151 + SGL_RS02005 0.16 +1.0
34,194 + SGL_RS02005 0.19 +0.2
34,199 + SGL_RS02005 0.19 +0.4
34,229 + SGL_RS02005 0.21 +0.3
34,229 + SGL_RS02005 0.21 +0.2
34,236 + SGL_RS02005 0.22 +0.7
34,277 - SGL_RS02005 0.24 +0.1
34,310 + SGL_RS02005 0.26 -0.5
34,318 - SGL_RS02005 0.27 +0.5
34,318 - SGL_RS02005 0.27 +0.8
34,348 - SGL_RS02005 0.29 -0.1
34,372 - SGL_RS02005 0.30 +0.5
34,372 - SGL_RS02005 0.30 +0.1
34,376 + SGL_RS02005 0.30 +2.0
34,384 - SGL_RS02005 0.31 +0.1
34,394 - SGL_RS02005 0.31 +0.7
34,394 - SGL_RS02005 0.31 +0.2
34,531 - SGL_RS02005 0.40 +0.4

Or see this region's nucleotide sequence