Experiment: Nickel (II) sulfate 5 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19390 and SGL_RS01070 are separated by 48 nucleotides SGL_RS01070 and SGL_RS01075 are separated by 18 nucleotides SGL_RS01075 and SGL_RS01080 are separated by 57 nucleotides SGL_RS01080 and SGL_RS01085 are separated by 106 nucleotides
SGL_RS19390: SGL_RS19390 - hypothetical protein, at 93,076 to 93,216
_RS19390
SGL_RS01070: SGL_RS01070 - hypothetical protein, at 93,265 to 93,654
_RS01070
SGL_RS01075: SGL_RS01075 - AAA family ATPase, at 93,673 to 94,188
_RS01075
SGL_RS01080: SGL_RS01080 - hypothetical protein, at 94,246 to 94,611
_RS01080
SGL_RS01085: SGL_RS01085 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 94,718 to 95,344
_RS01085
Position (kb) 93
94
95 Strain fitness (log2 ratio) -1
0
1
2 at 92.828 kb on - strand at 93.304 kb on - strand, within SGL_RS01070 at 93.331 kb on - strand, within SGL_RS01070 at 93.423 kb on - strand, within SGL_RS01070 at 93.520 kb on - strand, within SGL_RS01070 at 93.575 kb on - strand, within SGL_RS01070 at 93.581 kb on - strand, within SGL_RS01070 at 94.061 kb on + strand, within SGL_RS01075 at 94.285 kb on - strand, within SGL_RS01080 at 94.295 kb on - strand, within SGL_RS01080 at 94.519 kb on - strand, within SGL_RS01080 at 94.599 kb on + strand at 94.819 kb on - strand, within SGL_RS01085 at 94.831 kb on - strand, within SGL_RS01085 at 94.915 kb on - strand, within SGL_RS01085 at 94.935 kb on - strand, within SGL_RS01085 at 94.951 kb on - strand, within SGL_RS01085
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) sulfate 5 uM remove 92,828 - -0.3 93,304 - SGL_RS01070 0.10 +0.1 93,331 - SGL_RS01070 0.17 +0.4 93,423 - SGL_RS01070 0.41 +0.8 93,520 - SGL_RS01070 0.65 +0.4 93,575 - SGL_RS01070 0.79 -0.2 93,581 - SGL_RS01070 0.81 +0.1 94,061 + SGL_RS01075 0.75 +2.5 94,285 - SGL_RS01080 0.11 -0.7 94,295 - SGL_RS01080 0.13 +0.3 94,519 - SGL_RS01080 0.75 -0.8 94,599 + -0.3 94,819 - SGL_RS01085 0.16 -1.0 94,831 - SGL_RS01085 0.18 -0.4 94,915 - SGL_RS01085 0.31 +0.6 94,935 - SGL_RS01085 0.35 +0.3 94,951 - SGL_RS01085 0.37 -0.5
Or see this region's nucleotide sequence